Browse Element(s) Details


Os.14404.1.S1_at

Description gb:AK066974.1
DB_XREF= gi:32976992
TID=Os.14404.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089P10, full insert sequence.
FL= gb:AK058978.1 gb:AK066974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3882011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38780OsAffx.24637.5.S1_x_at5/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.18261.1.S1_at4/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.5051.1.S1_x_at2/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.13531.1.S1_x_at1/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38790OsAffx.31174.5.S1_x_at7/112+23438197..23442968expressed protein
LOC_Os02g38790OsAffx.31174.4.S1_x_at4/112+23438197..23442968expressed protein
LOC_Os02g38790Os.29932.2.S1_x_at1/112+23438197..23442968expressed protein
LOC_Os02g38800Os.13531.1.S1_x_at11/112+23445846..2344882726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38810Os.18441.1.S1_at11/112+23455595..2345997726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38820Os.14404.1.S1_at11/112+23460100..23462169expressed protein
LOC_Os02g38830Os.40855.2.S1_x_at7/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_x_at4/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40360.1.S1_x_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38840Os.26858.1.S1_at7/112+23474452..23480943Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14404.1.S1_at--742--2631Chr02:23460764..23460788 (25 bp)
AACCTCTGGCGCCAAAGAGTCGTTT
LOC_Os02g38820
Os.14404.1.S1_at--763--2671Chr02:23460450..23460474 (25 bp)
AAGCGCAGCATACCAGAGATCGTCA
LOC_Os02g38820
Os.14404.1.S1_at--786--6391Chr02:23460433..23460457 (25 bp)
GATCGTCAAGTGAACAGCCGGCTGT
LOC_Os02g38820
Os.14404.1.S1_at--648--1671Chr02:23460418..23460442 (25 bp)
AGCCGGCTGTAATTTTCCAGTGTGC
LOC_Os02g38820
Os.14404.1.S1_at--173--1591Chr02:23460373..23460397 (25 bp)
AGCTCTGTGTAGTTCCTCAATACTT
LOC_Os02g38820
Os.14404.1.S1_at--666--6071Chr02:23460304..23460328 (25 bp)
GAGTAACTTGCTTTGTTCTTCCTTA
LOC_Os02g38820
Os.14404.1.S1_at--989--6731Chr02:23460290..23460314 (25 bp)
GTTCTTCCTTACTAAATCTGCAGCT
LOC_Os02g38820
Os.14404.1.S1_at--831--471Chr02:23460275..23460299 (25 bp)
ATCTGCAGCTAGAGTCTCCTGGGAT
LOC_Os02g38820
Os.14404.1.S1_at--20--6651Chr02:23460204..23460228 (25 bp)
GTTGTATATTGACCTCGTTTCTGAT
LOC_Os02g38820
Os.14404.1.S1_at--786--7291Chr02:23460156..23460180 (25 bp)
GTGCGCGCGATTGCGTATGACCGAA
LOC_Os02g38820
Os.14404.1.S1_at--342--691Chr02:23460140..23460164 (25 bp)
ATGACCGAATGCTGTTTATCTGTTT
LOC_Os02g38820
Target Sequence 
AACCTCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGA
AGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAG
AGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCTGT
CCCAGATNAGCTCTGTGTAGTTCCTCAATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTNTGAG
TAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATG
GAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCG
TATGACCGAATGCTGTTTATCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis