Browse Element(s) Details


Os.14423.1.S1_x_at

Description gb:AK062617.1
DB_XREF= gi:32972635
TID=Os.14423.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B04, full insert sequence.
FL= gb:AK062617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g114009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11380Os.14390.1.S1_at11/116+5981670..5986672kinesin motor protein, putative, expressed
LOC_Os06g11390OsAffx.15368.1.S1_at11/116+6002867..6003975hypothetical protein
LOC_Os06g11400Os.14423.1.S1_at11/116+6006464..6009098expressed protein
LOC_Os06g11400Os.14423.1.S1_x_at9/116+6006464..6009098expressed protein
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14423.1.S1_x_at--586--991Chr06:6008568..6008592 (25 bp)
AGGATGGCCCGTTTGAGGCGATCAA
LOC_Os06g11400
Os.14423.1.S1_x_at--45--10711Chr06:6008506..6008530 (25 bp)
TTGCCGCCATTCGAGCAGAGCTTGG
LOC_Os06g11400
Os.14423.1.S1_x_at--465--891NONE
AGGCGCTCAGCTCTAAGTTGGATTT
NONE
Os.14423.1.S1_x_at--1123--971Chr06:6007046..6007070 (25 bp)
AGGAGACGTCTACTTTTGTCATGTA
LOC_Os06g11400
Os.14423.1.S1_x_at--1110--1091Chr06:6007017..6007041 (25 bp)
AGTGGTGCTTTCATTGCCGGATGGA
LOC_Os06g11400
Os.14423.1.S1_x_at--28--1491NONE
AGCAATTGATTCCATTCCCTTGTTC
NONE
Os.14423.1.S1_x_at--491--10511Chr06:6006871..6006983 (25 bp)
TTCCCTTGTTCCCAAAGATACTGCA
LOC_Os06g11400
Os.14423.1.S1_x_at--387--8431Chr06:6006839..6006863 (25 bp)
GGCCTTGGCTACACAATTTGGTTCA
LOC_Os06g11400
Os.14423.1.S1_x_at--603--1491Chr06:6006815..6006839 (25 bp)
AGCACACGGTATCTTCTTTTCAAGG
LOC_Os06g11400
Os.14423.1.S1_x_at--477--631Chr06:6006554..6006578 (25 bp)
ATGCTACAAAATTGCAATGCCTGTG
LOC_Os06g11400
Os.14423.1.S1_x_at--101--531Chr06:6006473..6006497 (25 bp)
ATCGAGCAGTCATCTGCTGTTTTGA
LOC_Os06g11400
Target Sequence 
AGGATGGCCCGTTTGAGGCGATCAANCGNTGANGGAGGATACTCGGTGGAGGAGTCTGTNGTCTTGCCGCCATTCGAGCA
GAGCTTGGTGGCGGCGGTGGCGGACAGTGTCGNGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGG
AGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGATGGATTTTGTCTGCTGTTGTTTCAGCAATTGAT
TCCATTCCCTTGTTCCCAAAGATACTGCAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTT
CAAGGAAAACAGAGATGAACTGNTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGAATANTGTG
TTANAATGANGCTGGACTTTANTTTCNTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAAATTGCAATGCCTGTG
CAATTATATGTATTGTTATCNGCTATTTGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14423.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis