Browse Element(s) Details


Os.145.1.S1_a_at

Description gb:AK103936.1
DB_XREF= gi:32989145
TID=Os.145.1
CNT=59
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for homologue of Tat binding protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G01, full insert sequence.
FL= gb:AB037155.1 gb:AK103936.1 gb:AK062185.1 gb:AK101474.1 gb:D17788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5600011/1126S protease regulatory subunit 6A homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein
LOC_Os02g55990Os.8229.1.S1_at11/112+34258114..34259944Synaptobrevin family protein, expressed
LOC_Os02g56000Os.145.1.S1_a_at11/112+34260098..3426405826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os02g56010Os.49119.1.S1_at11/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56010OsAffx.19720.2.S1_s_at1/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005516molecular_functioncalmodulin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.145.1.S1_a_at--955--1591Chr02:34261152..34261176 (25 bp)
AGCTGCAACTAATCGCGCGGACATT
LOC_Os02g56000
Os.145.1.S1_a_at--45--9771Chr02:34261143..34261167 (25 bp)
TAATCGCGCGGACATTCTTGATCCT
LOC_Os02g56000
Os.145.1.S1_a_at--611--6371Chr02:34261124..34261148 (25 bp)
GATCCTGCTTTGATGAGGTCTGGTA
LOC_Os02g56000
Os.145.1.S1_a_at--51--6051Chr02:34260860..34260884 (25 bp)
GAGTTGGCACGATCTACGGACGACT
LOC_Os02g56000
Os.145.1.S1_a_at--1024--9911Chr02:34260846..34260870 (25 bp)
TACGGACGACTTCAATGGTGCACAA
LOC_Os02g56000
Os.145.1.S1_a_at--1078--791Chr02:34260832..34260856 (25 bp)
ATGGTGCACAACTGAAGGCCGTTTG
LOC_Os02g56000
Os.145.1.S1_a_at--1128--4231Chr02:34260814..34260838 (25 bp)
CCGTTTGTGTAGAAGCAGGCATGCT
LOC_Os02g56000
Os.145.1.S1_a_at--102--10711Chr02:34260790..34260814 (25 bp)
TTGCCCTACGCCGAGATGCTACAGA
LOC_Os02g56000
Os.145.1.S1_a_at--930--10211Chr02:34260358..34260382 (25 bp)
TATTACGCTTAATTCTTCCGAGAGA
LOC_Os02g56000
Os.145.1.S1_a_at--245--3631Chr02:34260344..34260368 (25 bp)
CTTCCGAGAGAGTTATTAGGCCTAA
LOC_Os02g56000
Os.145.1.S1_a_at--504--5531Chr02:34260318..34260342 (25 bp)
GAAACGCTCCGTCCAAAATTGTTTG
LOC_Os02g56000
Target Sequence 
AGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGGTCTGGTAGGCTGGACCGAAAAATTGAGTTCCCTC
ATCCATCCGAAGAAGCACGAGCTAGAATTTTGCAAATCCATTCAAGAAAAATGAATGTAAACCCTGATGTCAACTTTGAA
GAGTTGGCACGATCTACGGACGACTTCAATGGTGCACAACTGAAGGCCGTTTGTGTAGAAGCAGGCATGCTTGCCCTACG
CCGAGATGCTACAGAGGTGACACACGAGGATTTCAATGAAGGGATCATACAAGTGCAAGCCAAAAAGAAGTCCAGTTTAA
ATTATTACGCTTAATTCTTCCGAGAGAGTTATTAGGCCTAAGGAAACGCTCCGTCCAAAATTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.145.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis