Browse Element(s) Details


Os.39653.1.S1_s_at

Description gb:CF331169
DB_XREF= gi:33810561
DB_XREF=NACL--07-C23.g1
CLONE=NACL--07-C23
TID=Os.39653.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39653 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178872.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5595011/11Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein
LOC_Os02g55990Os.8229.1.S1_at11/112+34258114..34259944Synaptobrevin family protein, expressed
LOC_Os02g56000Os.145.1.S1_a_at11/112+34260098..3426405826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os02g56010Os.49119.1.S1_at11/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56010OsAffx.19720.2.S1_s_at1/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016407molecular_functionacetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39653.1.S1_s_at--297--3151Chr02:34244631..34244655 (25 bp)
AATTCATAAGATCACGCCGTCCTTG
LOC_Os02g55950
Os.39653.1.S1_s_at--86--4251Chr02:34244647..34244671 (25 bp)
CCGTCCTTGAGAGGCAGTTTTGCAA
LOC_Os02g55950
Os.39653.1.S1_s_at--828--6491Chr02:34244703..34244727 (25 bp)
GATAGAGCAGGTGGCTGAGCACAAC
LOC_Os02g55950
Os.39653.1.S1_s_at--434--9991Chr02:34244732..34244756 (25 bp)
TAGCCCTAAACATCATCAGCCAAGT
LOC_Os02g55950
Os.39653.1.S1_s_at--455--9231Chr02:34244769..34244793 (25 bp)
TCCATCCCTGAGAGTTTCATTTGAG
LOC_Os02g55950
Os.39653.1.S1_s_at--1103--571Chr02:34244804..34244828 (25 bp)
ATCCACACTTTGCAGTCGCAGTTGT
LOC_Os02g55950
Os.39653.1.S1_s_at--1097--6031Chr02:34244832..34244856 (25 bp)
GAGATCATAGTTTCCTCTTGAAGAA
LOC_Os02g55950
Os.39653.1.S1_s_at--1127--2031Chr02:34244873..34244897 (25 bp)
ACTTCACCTTCGTTATCAATGGCAG
LOC_Os02g55950
Os.39653.1.S1_s_at--771--8491Chr02:34244892..34244916 (25 bp)
TGGCAGACGAGTCAGCTCCAACACA
LOC_Os02g55950
Os.39653.1.S1_s_at--291--1991Chr02:34244918..34244942 (25 bp)
ACTGCTGCTGTCTTGTTCATTGGTT
LOC_Os02g55950
Os.39653.1.S1_s_at--1012--4791Chr02:34244949..34244973 (25 bp)
GCTCCCTTATGTGCTTTAGGTTGTA
LOC_Os02g55950
Target Sequence 
AATTCATAAGATCACGCCGTCCTTGAGAGGCAGTTTTGCAAGTGAACCAGAAAAGCTNGCGGAGATCCGCCAGATAGAGC
AGGTGGCTGAGCACAACAGAATAGCCCTAAACATCATCAGCCAAGTTGGAGCTGGTGNTCCATCCCTGAGAGTTTCATTT
GAGTTTACACACCATCCACACTTTGCAGTCGCAGTTGTAANGAGATCATAGTTTCCTCTTGAAGAAGAGCAAAAATTTTC
CTACTTCACCTTCGTTATCAATGGCAGACGAGTCAGCTCCAACACAGACTGCTGCTGTCTTGTTCATTGGTTCGTCCGGC
TCCCTTATGTGCTTTAGGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39653.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis