Browse Element(s) Details


OsAffx.24888.1.S1_at

Description tigr:9630.m05548
TID=OsAffx.24888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5593011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24888.1.S1_at--803--4351Chr02:34232451..34232475 (25 bp)
CCAGAGCGGCGGAAGTTGAAGCGGC
LOC_Os02g55930
OsAffx.24888.1.S1_at--981--6251Chr02:34232035..34232365 (25 bp)
GATGTCCGGCTCGATGGTGGCCCTC
LOC_Os02g55930
OsAffx.24888.1.S1_at--586--8711Chr02:34232033..34232363 (25 bp)
TGTCCGGCTCGATGGTGGCCCTCGC
LOC_Os02g55930
OsAffx.24888.1.S1_at--754--911Chr02:34231992..34232016 (25 bp)
AGGCTCGATGTTGGCCATGTCGTGA
LOC_Os02g55930
OsAffx.24888.1.S1_at--408--9391Chr02:34231988..34232012 (25 bp)
TCGATGTTGGCCATGTCGTGAGCCT
LOC_Os02g55930
OsAffx.24888.1.S1_at--616--10871Chr02:34231982..34232006 (25 bp)
TTGGCCATGTCGTGAGCCTGTCGCA
LOC_Os02g55930
OsAffx.24888.1.S1_at--908--8431Chr02:34231980..34232004 (25 bp)
GGCCATGTCGTGAGCCTGTCGCATA
LOC_Os02g55930
OsAffx.24888.1.S1_at--350--771Chr02:34231976..34232000 (25 bp)
ATGTCGTGAGCCTGTCGCATACGCC
LOC_Os02g55930
OsAffx.24888.1.S1_at--990--9412Chr08:6291508..6291571 (25 bp)
TCGTGAGCCTGTCGCATACGCCAGA
NONE
OsAffx.24888.1.S1_at--75--7391Chr02:34231971..34231995 (25 bp)
GTGAGCCTGTCGCATACGCCAGATG
LOC_Os02g55930
OsAffx.24888.1.S1_at--618--5872Chr05:17610022..17610041 (20 bp)
GAGCCTGTCGCATACGCCAGATGCC
NONE
Target Sequence 
CCAGAGCGGCGGAAGTTGAAGCGGCGGCGGCGGTGGGAGCGCCGACGGATGGCGCTCGCCCTGCAGACCGATTGCTTCAC
CAGCGACCTGAGCCAGCTCATCGCCGACGTGATGTCCGGCTCGATGGTGGCCCTCGCCCCTAACCAGCTTGACAGGCTCG
ATGTTGGCCATGTCGTGAGCCTGTCGCATACGCCAGATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis