Browse Element(s) Details


Os.12069.1.S1_at

Description gb:AK064361.1
DB_XREF= gi:32974379
TID=Os.12069.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B10, full insert sequence.
FL= gb:AK064361.1 gb:AK102146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5589011/11Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55850OsAffx.24887.1.S1_at11/112+34183635..34184018hypothetical protein
LOC_Os02g55860NANA2+34185762..34188116retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g55870Os.20580.1.S1_at11/112+34193672..34197835Heparanase-like protein 3 precursor, putative, expressed
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0010248biological_processestablishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739cellular_componentmitochondrion
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0010008cellular_componentendosome membrane
GO:0009678molecular_functionhydrogen-translocating pyrophosphatase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12069.1.S1_at--684--453Chr10:4398990..4399457 (25 bp)
ATCTCTGCGTCGAACACCGGTGGCG
NONE
Os.12069.1.S1_at--978--7211Chr02:34204913..34204937 (25 bp)
GTCGAGTCGCTGGTGTTCGCGCCAT
LOC_Os02g55890
Os.12069.1.S1_at--958--3611Chr02:34204887..34204911 (25 bp)
CTTCGCCACGCACGGAGGAATTCTA
LOC_Os02g55890
Os.12069.1.S1_at--729--5211Chr02:34204870..34204894 (25 bp)
GAATTCTATTCAAGCTCTTCTAGGA
LOC_Os02g55890
Os.12069.1.S1_at--1025--9731Chr02:34204794..34204818 (25 bp)
TAATAACTAGACCACGGGATCATGT
LOC_Os02g55890
Os.12069.1.S1_at--796--211Chr02:34204675..34204699 (25 bp)
ATTTGTTTTTAACTTGCTGCGTCGT
LOC_Os02g55890
Os.12069.1.S1_at--1009--4772Chr05:21445614..21446007 (25 bp)
GCTGCGTCGTTTTCAGTTTCTGTCT
NONE
Os.12069.1.S1_at--774--6831Chr02:34204645..34204669 (25 bp)
GTTTCTGTCTGCCTGAGCCCTGAGG
LOC_Os02g55890
Os.12069.1.S1_at--53--1671Chr02:34204630..34204654 (25 bp)
AGCCCTGAGGCATCGTGAACTTCTT
LOC_Os02g55890
Os.12069.1.S1_at--1003--3651Chr02:34204608..34204632 (25 bp)
CTTTTAGCTGATGTACGGCTTGTAT
LOC_Os02g55890
Os.12069.1.S1_at--612--6251Chr02:34204573..34204597 (25 bp)
GATGGTTTTCATCTGCAGTTTATGT
LOC_Os02g55890
Target Sequence 
ATCTCTGCGTCGAACACCGGTGGCGCATGGGACAACGCAAAGAAATACATCGAGGCTGGGGCGAGTGAGCACGCGAGGTC
GCTGGGGCCCAAGGGATCGGACTGCCACAAGGCGGCGGTGATCGGCGACACCATTGGCGACCCGCTCAAGGACACGTCGG
GCCCGTCGCTGAACATCCTCATCAAGCTCATGGCCGTCGAGTCGCTGGTGTTCGCGCCATTCTTCGCCACGCACGGAGGA
ATTCTATTCAAGCTCTTCTAGGAGAGAGAGATTTAAAATTCGATCGAATTTGAGGACGGACGGAGATTTTCGAATAATAA
CTAGACCACGGGATCATGTGGGCTGAAAAAAAGGAACCTCTGCAAATAATGTTGCTTTGGTGGTAGTGGGACACTATCTC
TACGATTTAATTTTGTCTCATGTAGGTTTTGTAATTTGTTTTTAACTTGCTGCGTCGTTTTCAGTTTCTGTCTGCCTGAG
CCCTGAGGCATCGTGAACTTCTTTTAGCTGATGTACGGCTTGTATAAAGTGACCAGATGGTTTTCATCTGCAGTTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis