Browse Element(s) Details


Os.5288.1.S1_a_at

Description gb:AB112060.1
DB_XREF= gi:31711496
GEN=OsMGDGs
TID=Os.5288.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5288 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) OsMGDGs gene for putative monogalactosyldiacylglycerol synthase, complete cds.
PROD=putative monogalactosyldiacylglycerol synthase
FL= gb:AB112060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5591011/11Monogalactosyldiacylglycerol synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55870Os.20580.1.S1_at11/112+34193672..34197835Heparanase-like protein 3 precursor, putative, expressed
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0009706cellular_componentchloroplast inner membrane
GO:0009707cellular_componentchloroplast outer membrane
GO:0009941cellular_componentchloroplast envelope
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046509molecular_function1,2-diacylglycerol 3-beta-galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5288.1.S1_a_at--894--4411Chr02:34220985..34221009 (25 bp)
GCCAGAAGCGGTGTTTGATATTGTC
LOC_Os02g55910
Os.5288.1.S1_a_at--419--191Chr02:34221046..34221070 (25 bp)
ATTTCACAGATATCCAGTTCCTTGA
LOC_Os02g55910
Os.5288.1.S1_a_at--792--1191Chr02:34221061..34221085 (25 bp)
AGTTCCTTGACATCATCCTTTTTCA
LOC_Os02g55910
Os.5288.1.S1_a_at--302--9251Chr02:34221076..34221100 (25 bp)
TCCTTTTTCATACCATCGCCAGAAA
LOC_Os02g55910
Os.5288.1.S1_a_at--85--4271Chr02:34221094..34221118 (25 bp)
CCAGAAACCACACCTATACAACTTA
LOC_Os02g55910
Os.5288.1.S1_a_at--26--10571Chr02:34221150..34221174 (25 bp)
TTCTTTGACCTCGTGAAATTTGCCT
LOC_Os02g55910
Os.5288.1.S1_a_at--1093--3731Chr02:34221159..34221183 (25 bp)
CTCGTGAAATTTGCCTTTGTCCTAC
LOC_Os02g55910
Os.5288.1.S1_a_at--731--4451Chr02:34221171..34221195 (25 bp)
GCCTTTGTCCTACAATGTCCTGAAA
LOC_Os02g55910
Os.5288.1.S1_a_at--161--10011Chr02:34221218..34221242 (25 bp)
TAGCTGGTTTGTTTCATCTGTCTCA
LOC_Os02g55910
Os.5288.1.S1_a_at--1047--10791Chr02:34221226..34221250 (25 bp)
TTGTTTCATCTGTCTCACGGCGTTG
LOC_Os02g55910
Os.5288.1.S1_a_at--840--3451Chr02:34221263..34221287 (25 bp)
CAGGATTTCGACTGCTTTTCAGTTT
LOC_Os02g55910
Target Sequence 
GCCAGAAGCGGTGTTTGATATTGTCAGANACATNCATGANCTATNTCNGGAGCAAGGGGTGATTTCACAGATATCCAGTT
CCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAA
CTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGG
TTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5288.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis