Browse Element(s) Details


Os.9947.1.S1_at

Description gb:AK063404.1
DB_XREF= gi:32973422
TID=Os.9947.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A06, full insert sequence.
FL= gb:AK063404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5594010/11ribosomal protein S15 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein
LOC_Os02g55990Os.8229.1.S1_at11/112+34258114..34259944Synaptobrevin family protein, expressed
LOC_Os02g56000Os.145.1.S1_a_at11/112+34260098..3426405826S protease regulatory subunit 6A homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9947.1.S1_at--488--6571Chr02:34235652..34235676 (25 bp)
GATTCATATTGTCTTGTCCTGTCGA
LOC_Os02g55940
Os.9947.1.S1_at--839--1611Chr02:34235677..34235701 (25 bp)
AGCTGGGTCTTCGTGATGTACCGGA
LOC_Os02g55940
Os.9947.1.S1_at--28--5811Chr02:34235872..34235896 (25 bp)
GACGCTCTGCTCGAAATGGGTTTGA
LOC_Os02g55940
Os.9947.1.S1_at--794--571Chr02:34235896..34235920 (25 bp)
ATCCATTCTCTCAGTGTTGCTCGAA
LOC_Os02g55940
Os.9947.1.S1_at--489--10631Chr02:34235926..34235950 (25 bp)
TTCGATCCAGTCTCTCAGTGCTGTA
LOC_Os02g55940
Os.9947.1.S1_at--804--2571Chr02:34235968..34235992 (25 bp)
AACGGATTGTTAATCCCCTTCTCAT
LOC_Os02g55940
Os.9947.1.S1_at--1069--5071Chr02:34236036..34236060 (25 bp)
GCAGCCATCCTGTAACAGCTACATG
LOC_Os02g55940
Os.9947.1.S1_at--861--1311Chr02:34236073..34236097 (25 bp)
AGAGTTGAGTTCTCCCATTCTACTT
LOC_Os02g55940
Os.9947.1.S1_at--880--9811Chr02:34236134..34236158 (25 bp)
TAACTTCTCTTATTCACTGTGTCTG
LOC_Os02g55940
Os.9947.1.S1_at--922--3331Chr02:34236148..34236172 (25 bp)
CACTGTGTCTGATTCCTTGTTATGG
LOC_Os02g55940
Os.9947.1.S1_at--816--8211NONE
GGCACCACCCAAGTTTTAATCCATA
NONE
Target Sequence 
GATTCATATTGTCTTGTCCTGTCGAAGCTGGGTCTTCGTGATGTACCGGAGTACAAAGCTCCTGATTACAANGAACAAAT
CCACCAGTAAAGCCAAATCTAAGAAGAGCAAGAGCAAGAAAAGAAAGATGAAAGCATAAATCTGTAACCAAGATCGTCTT
CACCTCTCCCTCCCTGCGGCCTTGAACTGCATGGCCAGCAAGGTTGATGATCGAAAATACAGACGCTCTGCTCGAAATGG
GTTTGATCCATTCTCTCAGTGTTGCTCGAAATGGGTTCGATCCAGTCTCTCAGTGCTGTATCTTTTGTAGTAATAACAAC
GGATTGTTAATCCCCTTCTCATTTTCNTTTTTGGTAGCAATGTTTCTTATTTTTCATGAGAAGGTGCAGCCATCCTGTAA
CAGCTACATGTGTTTTTTTTATAGAGTTGAGTTCTCCCATTCTACTTCCTGGGAGAACGGGATTGATCATTGATGAATAC
TAATAACTTCTCTTATTCACTGTGTCTGATTCCTTGTTATGGAGGTGATGCTGGGTGGCACCACCCAAGTTTTAATCCAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis