Browse Element(s) Details


Os.20580.1.S1_at

Description gb:AK107538.1
DB_XREF= gi:32992747
TID=Os.20580.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H06, full insert sequence.
FL= gb:AK107538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5587011/11Heparanase-like protein 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55830Os.34131.1.S1_s_at10/112+34172692..34174827hAT family dimerisation domain containing protein
LOC_Os02g55840Os.49357.1.S1_at11/112+34176218..34178715expressed protein
LOC_Os02g55840Os.17702.2.S1_x_at1/112+34176218..34178715expressed protein
LOC_Os02g55850OsAffx.24887.1.S1_at11/112+34183635..34184018hypothetical protein
LOC_Os02g55860NANA2+34185762..34188116retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g55870Os.20580.1.S1_at11/112+34193672..34197835Heparanase-like protein 3 precursor, putative, expressed
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004566molecular_functionbeta-glucuronidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20580.1.S1_at--144--7491Chr02:34197237..34197261 (25 bp)
GTGGGATCACTCTACTCCTGATCAA
LOC_Os02g55870
Os.20580.1.S1_at--906--5291Chr02:34197302..34197326 (25 bp)
GAAGGCGTGCAACCTTACAGCACAA
LOC_Os02g55870
Os.20580.1.S1_at--366--5031Chr02:34197339..34197363 (25 bp)
GCAGAAGGTTCGGACGCATCCCCGG
LOC_Os02g55870
Os.20580.1.S1_at--112--5411Chr02:34197374..34197398 (25 bp)
GAAGCTCAGCTCATCAGAGAAGAGT
LOC_Os02g55870
Os.20580.1.S1_at--864--1531Chr02:34197435..34197459 (25 bp)
AGCATGTGCTGCTGAATGGCAATGT
LOC_Os02g55870
Os.20580.1.S1_at--596--851Chr02:34197450..34197474 (25 bp)
ATGGCAATGTGTTGGCACCTGATGC
LOC_Os02g55870
Os.20580.1.S1_at--1018--5011Chr02:34197505..34197529 (25 bp)
GCAGGTGGAGGGAACACAGCCCATA
LOC_Os02g55870
Os.20580.1.S1_at--1060--3591Chr02:34197547..34197571 (25 bp)
CATTGTGTTTGCTCATATTCCCAGA
LOC_Os02g55870
Os.20580.1.S1_at--512--231Chr02:34197561..34197585 (25 bp)
ATATTCCCAGATTCTATGCTCCTGC
LOC_Os02g55870
Os.20580.1.S1_at--920--3691Chr02:34197574..34197598 (25 bp)
CTATGCTCCTGCCTGTAGGTAGATA
LOC_Os02g55870
Os.20580.1.S1_at--328--1591Chr02:34197729..34197753 (25 bp)
AGCTCTGTGATTTGCCATTCTTTTA
LOC_Os02g55870
Target Sequence 
GTGGGATCACTCTACTCCTGATCAACCTCAGTGGCAACAACACAAACCATATCTACNTGACGAGCGAAGGCGTGCAACCT
TACAGCACAAAGAAGGAGGGCCGCAGAAGGTTCGGACGCATCCCCGGGCTCGGCGAAGAAGCTCAGCTCATCAGAGAAGA
GTACCATCTCACCCCCAAAGATGGGAGCCTGCANAGCCAGCATGTGCTGCTGAATGGCAATGTGTTGGCACCTGATGCCN
ATGGAGAGATCCCTAAGCTGGANCCTGTGCAGGTGGAGGGAACACAGCCCATAACANGTGGCTCCTTACTCCATTGTGTT
TGCTCATATTCCCAGATTCTATGCTCCTGCCTGTAGGTAGATATTGTTGATTGTTGATTGGTTTTTGTGTGAATTTGGGA
TGATGTTTATTATCTTCATAGATTTAGAGTAATTGTGGGTGAGAGGCNAAGCATGCTCACCTGCTGCNNAAATGAAGTAA
ACTGTAAGGCTGAAAGCTCTGTGATTTGCCATTCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis