Browse Element(s) Details


Os.146.1.S1_at

Description gb:D16292.1
DB_XREF= gi:303848
GEN=NDKR
TID=Os.146.1
CNT=127
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.146 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for nucleoside diphosphate kinase, complete cds.
PROD=nucleoside diphosphate kinase
FL= gb:D16292.1 gb:AK121796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3097011/11Nucleoside diphosphate kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30930OsAffx.16500.1.S1_at11/117+18307988..18309961pentatricopeptide, putative, expressed
LOC_Os07g30940Os.5232.1.A1_at11/117+18320091..18322980expressed protein
LOC_Os07g30950Os.54865.1.S1_at10/117+18327264..18329088Taxane 10-beta-hydroxylase, putative, expressed
LOC_Os07g30960OsAffx.5487.1.S1_at10/117+18330234..18332264CTF2A, putative, expressed
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative
LOC_Os07g31000NANA7+18356514..18356864expressed protein
LOC_Os07g31010Os.52939.1.S1_at6/117+18358468..18362000hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009585biological_processred, far-red light phototransduction
GO:0009734biological_processauxin mediated signaling pathway
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004550molecular_functionnucleoside diphosphate kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.146.1.S1_at--108--2831Chr07:18334361..18334385 (25 bp)
AAGTTCATGAATGTGGAGAGGTCCT
LOC_Os07g30970
Os.146.1.S1_at--481--8551Chr07:18334348..18334372 (25 bp)
TGGAGAGGTCCTTTGCACAGCAGCA
LOC_Os07g30970
Os.146.1.S1_at--680--10271Chr07:18334337..18334361 (25 bp)
TTTGCACAGCAGCACTATGCCGACC
LOC_Os07g30970
Os.146.1.S1_at--667--5111Chr07:18334326..18334350 (25 bp)
GCACTATGCCGACCTTTCCGACAAG
LOC_Os07g30970
Os.146.1.S1_at--538--10551Chr07:18334298..18334322 (25 bp)
TTCTTCCCTGGGTTGGTGGAGTACA
LOC_Os07g30970
Os.146.1.S1_at--122--8631Chr07:18334285..18334309 (25 bp)
TGGTGGAGTACATCATCTCTGGCCC
LOC_Os07g30970
Os.146.1.S1_at--1040--9451Chr07:18334268..18334292 (25 bp)
TCTGGCCCCGTCGTTGCGATGGTTT
LOC_Os07g30970
Os.146.1.S1_at--1148--5291Chr07:18334236..18334260 (25 bp)
GAAGGATGTTGTTGCCACTGGCCGC
LOC_Os07g30970
Os.146.1.S1_at--93--6651Chr07:18334229..18334253 (25 bp)
GTTGTTGCCACTGGCCGCAGGATCA
LOC_Os07g30970
Os.146.1.S1_at--997--551Chr07:18334166..18334190 (25 bp)
ATCCGTGCTGACTATGCCGTGGAAG
LOC_Os07g30970
Os.146.1.S1_at--1088--6691Chr07:18333636..18333660 (25 bp)
GTTCCCTGAAGGTTTAGCTGAGTGG
LOC_Os07g30970
Target Sequence 
AAGTTCATGAATGTGGAGAGGTCCTTTGCACAGCAGCACTATGCCGACCTTTCCGACAAGCCCTTCTTCCCTGGGTTGGT
GGAGTACATCATCTCTGGCCCCGTCGTTGCGATGGTTTGGGAAGGGAAGGATGTTGTTGCCACTGGCCGCAGGATCATTG
GGGCCACCAGGCCCTGGGAGGCAGCCCCCGGCACCATCCGTGCTGACTATGCCGTGGAAGTTGGCAGGAATGTCATCCAT
GGGAGCGACTCCGTGGACAACGGGAAGAAGGAGATCGCTCTCTGGTTCCCTGAAGGTTTAGCTGAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis