Browse Element(s) Details


Os.14642.1.S1_at

Description gb:AK064771.1
DB_XREF= gi:32974789
TID=Os.14642.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A17, full insert sequence.
FL= gb:AK064771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0778011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07760OsAffx.7518.1.S1_at11/1112+3908135..3908659hypothetical protein
LOC_Os12g07760Os.19951.1.S1_x_at1/1112+3908135..3908659hypothetical protein
LOC_Os12g07770NANA12+3917238..3920109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07780Os.14642.1.S1_at11/1112+3931470..3934989Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g07790OsAffx.19540.1.S1_at11/1112+3935376..3937091No apical meristem protein
LOC_Os12g07800Os.54500.1.S1_at9/1112+3939712..3942754D-mannose binding lectin family protein, expressed
LOC_Os12g07810Os.23454.1.A1_at10/1112+3946119..3954901aldehyde dehydrogenase family protein, expressed
LOC_Os12g07820Os.9266.1.S1_at11/1112+3954980..3958804L-ascorbate peroxidase 6, chloroplast precursor, putative, expressed
LOC_Os12g07830Os.18504.1.S1_at11/1112+3959511..3963000L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14642.1.S1_at--360--8571Chr12:3934391..3934415 (25 bp)
TGGATCTTCCCTTCTGTGATCATTT
LOC_Os12g07780
Os.14642.1.S1_at--747--7391Chr12:3934406..3934430 (25 bp)
GTGATCATTTCACACACCTGAACAT
LOC_Os12g07780
Os.14642.1.S1_at--644--951Chr12:3934489..3934513 (25 bp)
AGGACGGTTATTGTTGGCCTCAGTT
LOC_Os12g07780
Os.14642.1.S1_at--314--3711Chr12:3934507..3934531 (25 bp)
CTCAGTTCCCCAACATCATTGGTTA
LOC_Os12g07780
Os.14642.1.S1_at--839--10151Chr12:3934530..3934554 (25 bp)
TATCAGAATGAGCAGTCCGCAGTCT
LOC_Os12g07780
Os.14642.1.S1_at--569--7251Chr12:3934544..3934568 (25 bp)
GTCCGCAGTCTGTTACAGTTCAATT
LOC_Os12g07780
Os.14642.1.S1_at--1053--2871Chr12:3934639..3934663 (25 bp)
AAGGGAGGCTCTACACGGTATTATT
LOC_Os12g07780
Os.14642.1.S1_at--924--8791Chr12:3934742..3934766 (25 bp)
TGTTCCTATGAAACAGTCCCAGTCC
LOC_Os12g07780
Os.14642.1.S1_at--758--7911Chr12:3934780..3934804 (25 bp)
GGTTGGCACAAAGTTCTTCCTGTAT
LOC_Os12g07780
Os.14642.1.S1_at--10--491Chr12:3934836..3934860 (25 bp)
ATCTGTTATTGGCTGGGACTATACA
LOC_Os12g07780
Os.14642.1.S1_at--7--6791Chr12:3934893..3934917 (25 bp)
GTTAGCTGATTCCTTAGTGTCATTG
LOC_Os12g07780
Target Sequence 
TGGATCTTCCCTTCTGTGATCATTTCACACACCTGAACATATATACCCATAATTACTCTNTGTTTATTCAAACAGTGACA
ATACCATTCATGGATTTGAGGACGGTTATTGTTGGCCTCAGTTCCCCAACATCATTGGTTATCAGAATGAGCAGTCCGCA
GTCTGTTACAGTTCAATTACAAAATGAGCGACAAGGGAAAAGGCCATTAGGATGATAGAAGGACCAACCGTCAGAAGGAT
GAACATCAAAGGGAGGCTCTACACGGTATTATTAGGTGAATGTATTCTTTAGAAAAGAGAAAATCTAGTTACCTGTAAAC
ATCATCATGTTCATATGAAATAAAATTATGATGTTCCTATGAAACAGTCCCAGTCCCAGTCCCACTCTTGGTTGGCACAA
AGTTCTTCCTGTATACTTGTAAGACTGAATATAATTAGTTCCACAATCTGTTATTGGCTGGGACTATACATTATGTAGTC
TAATATGCTATGTATATGATTTGTTAGCTGATTCCTTAGTGTCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis