Browse Element(s) Details


Os.14713.1.S1_at

Description gb:AK106270.1
DB_XREF= gi:32991479
TID=Os.14713.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G08, full insert sequence.
FL= gb:AK106270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0493011/11SPRY domain containing protein, expressed
LOC_Os03g142601/11Sec7 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04880Os.51897.1.S1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.26788.1.S1_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.6588.1.A1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04890OsAffx.29313.1.S1_at1/1112+2100030..2101631hypothetical protein
LOC_Os12g04900Os.27691.1.S1_x_at1/1112+2106317..2107273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04910Os.27691.1.S1_x_at1/1112+2107523..2112084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04920Os.37680.1.S1_at2/1112+2115499..2117461GRF zinc finger family protein
LOC_Os12g04930Os.14713.1.S1_at11/1112+2120024..2123287SPRY domain containing protein, expressed
LOC_Os12g04940Os.18447.1.S1_at3/1112+2127574..2134180expressed protein
LOC_Os12g04950NANA12+2136931..2138890retrotransposon, putative, centromere-specific
LOC_Os12g04960OsAffx.19499.1.S1_at11/1112+2139895..2142972hypothetical protein
LOC_Os12g04970NANA12+2147803..2149470retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14713.1.S1_at--157--9191Chr12:2122893..2122917 (25 bp)
TGCCTGACCAACCAAACTGTCAAGT
LOC_Os12g04930
Os.14713.1.S1_at--393--9391Chr12:2122969..2122993 (25 bp)
TCGATTGATTCCTCGACCAATGAGT
LOC_Os12g04930
Os.14713.1.S1_at--956--9351Chr12:2122981..2123005 (25 bp)
TCGACCAATGAGTGACGTGCCTTAT
LOC_Os12g04930
Os.14713.1.S1_at--927--3991Chr12:2122996..2123020 (25 bp)
CGTGCCTTATAGACCATTTGAGCTG
LOC_Os12g04930
Os.14713.1.S1_at--669--8471Chr12:2123026..2123050 (25 bp)
TGGCGGGCCTGCTGAAAATGGTACT
LOC_Os12g04930
Os.14713.1.S1_at--140--5931Chr12:2123104..2123128 (25 bp)
GAGCATAATCATGTAATCCGGTTAA
LOC_Os12g04930
Os.14713.1.S1_at--369--3011Chr12:2123118..2123142 (25 bp)
AATCCGGTTAAAGAGCGCGCAGGCT
LOC_Os12g04930
Os.14713.1.S1_at--85--10172Chr12:2123175..2123199 (25 bp)
TATCACCTGAGGTTCTTCTGGTTTG
LOC_Os12g04930
Os.14713.1.S1_at--488--3031Chr12:2123234..2123258 (25 bp)
AATCTTTCCCATCAACGCATGGCTT
LOC_Os12g04930
Os.14713.1.S1_at--82--1851Chr12:2123248..2123272 (25 bp)
ACGCATGGCTTTAATACTGTTAACA
LOC_Os12g04930
Os.14713.1.S1_at--422--1951Chr12:2123263..2123287 (25 bp)
ACTGTTAACACAAGATTTCGTCAAT
LOC_Os12g04930
Target Sequence 
TGCCTGACCAACCAAACTGTCAAGTCAGGTTCAACTTTGGTCCCAATTTTGAGTTCTTCCCAGAAGATTTTGGAGGTCGA
TTGATTCCTCGACCAATGAGTGACGTGCCTTATAGACCATTTGAGCTGGCGAATGGCGGGCCTGCTGAAAATGGTACTGC
TGAAAAAAACATTTAACTGCAGTGAAAATTCTGCTTTAGTTATGTAGAATAGAGCATAATCATGTAATCCGGTTAAAGAG
CGCGCAGGCTGANTTGGTTAGTTTGTCTGGTTATTAAATATNNTTATCACCTGAGGTTCTTCTGGTTTGGCCATTTGACC
TTCGTGTAGCAACGCATGGCTTCAATCTTTCCCATCAACGCATGGCTTTAATACTGTTAACACAAGATTTCGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis