Browse Element(s) Details


Os.14776.1.A1_at

Description gb:AK064093.1
DB_XREF= gi:32974111
TID=Os.14776.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14776 (NCBI UniGene Cluster)
UG_TITLE=Clone Osl318 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E09, full insert sequence.
FL= gb:AK064093.1 gb:AK069004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1206411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein
LOC_Os03g12080NANA3+6318131..6319924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14776.1.A1_at--1029--4971Chr03:6306481..6306505 (25 bp)
GCATCCTCCAACTTGTGCACGTCTT
LOC_Os03g12064
Os.14776.1.A1_at--333--8031Chr03:6306543..6306567 (25 bp)
GGAGTTTTGTCTGCCCATGCACATA
LOC_Os03g12064
Os.14776.1.A1_at--368--9031Chr03:6306560..6306584 (25 bp)
TGCACATATACACATCACGCGGATC
LOC_Os03g12064
Os.14776.1.A1_at--222--5112Chr03:6306631..6306655 (25 bp)
GCACGGTGGCATCTCGATCGATCTA
LOC_Os03g12064
Os.14776.1.A1_at--489--7171Chr03:6306682..6306706 (25 bp)
GTCTCGATCGATTCGCGACATGTTC
LOC_Os03g12064
Os.14776.1.A1_at--1127--5651Chr03:6306698..6306722 (25 bp)
GACATGTTCGCCGAGATCTATCGAT
LOC_Os03g12064
Os.14776.1.A1_at--72--5351Chr03:6306723..6306747 (25 bp)
GAAGAGGCCGGATCCCGACCGTGAT
LOC_Os03g12064
Os.14776.1.A1_at--147--251Chr03:6306783..6306807 (25 bp)
ATATGCTTTGTGGTCGGGTATGGAT
LOC_Os03g12064
Os.14776.1.A1_at--100--10111Chr03:6306801..6306825 (25 bp)
TATGGATGTTCCGTCTCAACGTCAA
LOC_Os03g12064
Os.14776.1.A1_at--631--8051Chr03:6306868..6306892 (25 bp)
GGAGATCTGTGCTGAAGCTTTCCCT
LOC_Os03g12064
Os.14776.1.A1_at--1071--8971Chr03:6306880..6306900 (21 bp)
TGAAGCTTTCCCTCTCTCAAGATTC
LOC_Os03g12064
Target Sequence 
GCATCCTCCAACTTGTGCACGTCTTCCTCCTCGATCTCCATGGCCGAGTTCCTTCGCCGGCCGGAGTTTTGTCTGCCCAT
GCACATATACACATCACGCGGATCGAAGATGGGATGAACGTACGTGGAGCGGTGGAGGTGCAACCGGCAGGCACGGTGGC
ATCTCGATCGATCTATCGATCGATGAGGAGGCCACGGTGGCGTCTCGATCGATTCGCGACATGTTCGCCGAGATCTATCG
ATGAAGAGGCCGGATCCCGACCGTGATGCGCGTGCGGGCGTGCGGCGTCCTCGGCGGCGCCGATATGCTTTGTGGTCGGG
TATGGATGTTCCGTCTCAACGTCAACATATCGAGCTAATTAGTATTTCTTTGGACAATAATGGCGATGGAGATCTGTGCT
GAAGCTTTCCCTCTCTCAAGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14776.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis