Browse Element(s) Details


Os.14776.2.A1_at

Description gb:AF358775.1
DB_XREF= gi:19070776
TID=Os.14776.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14776 (NCBI UniGene Cluster)
UG_TITLE=Clone Osl318 unknown mRNA
DEF=Oryza sativa clone Osl318 unknown mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1206411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein
LOC_Os03g12080NANA3+6318131..6319924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14776.2.A1_at--437--8731Chr03:6313000..6313024 (25 bp)
TGTAATAGGAACAGTGCTTGCCATT
LOC_Os03g12064
Os.14776.2.A1_at--858--1111Chr03:6313012..6313036 (25 bp)
AGTGCTTGCCATTGACTGTGCTAGC
LOC_Os03g12064
Os.14776.2.A1_at--442--10691Chr03:6313017..6313041 (25 bp)
TTGCCATTGACTGTGCTAGCGATTT
LOC_Os03g12064
Os.14776.2.A1_at--78--10771Chr03:6313023..6313047 (25 bp)
TTGACTGTGCTAGCGATTTACTTCT
LOC_Os03g12064
Os.14776.2.A1_at--518--4631Chr03:6313035..6313059 (25 bp)
GCGATTTACTTCTTATTCAGAGCAC
LOC_Os03g12064
Os.14776.2.A1_at--516--10391Chr03:6313047..6313071 (25 bp)
TTATTCAGAGCACAAGAGTCCACTT
LOC_Os03g12064
Os.14776.2.A1_at--412--2791Chr03:6313060..6313084 (25 bp)
AAGAGTCCACTTTATGTTGCGCTGT
LOC_Os03g12064
Os.14776.2.A1_at--148--10431Chr03:6313071..6313095 (25 bp)
TTATGTTGCGCTGTGGGATGCCTCA
LOC_Os03g12064
Os.14776.2.A1_at--682--731Chr03:6313073..6313097 (25 bp)
ATGTTGCGCTGTGGGATGCCTCACC
LOC_Os03g12064
Os.14776.2.A1_at--1137--4171Chr03:6313099..6313123 (25 bp)
CCCATTACCTATTGCTTCTCAGTTT
LOC_Os03g12064
Os.14776.2.A1_at--265--151Chr03:6313102..6313126 (25 bp)
ATTACCTATTGCTTCTCAGTTTCCC
LOC_Os03g12064
Target Sequence 
TGTAATAGGAACAGTGCTTGCCATTGACTGTGCTAGCGATTTACTTCTTATTCAGAGCACAAGAGTCCACTTTATGTTGC
GCTGTGGGATGCCTCACCCCCCATTACCTATTGCTTCTCAGTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14776.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis