Browse Element(s) Details


Os.14790.1.S1_at

Description gb:AK063274.1
DB_XREF= gi:32973292
TID=Os.14790.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0454H12.18 (P0454H12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C02, full insert sequence.
FL= gb:AK063274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6026010/11KH domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60220NANA1+35150794..35156949transposon protein, putative, unclassified
LOC_Os01g60230Os.38376.2.S1_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_s_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_at9/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60250OsAffx.21647.1.S1_at11/111+35170523..35172361pentatricopeptide, putative
LOC_Os01g60260Os.14790.1.S1_at10/111+35179157..35182769KH domain-containing protein, putative, expressed
LOC_Os01g60270Os.24893.1.S1_a_at11/111+35189336..35192977WUSCHEL-related homeobox 14, putative, expressed
LOC_Os01g60280Os.34757.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280OsAffx.980.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280Os.52345.1.S1_at10/111+35195255..35206298Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14790.1.S1_at--894--1351Chr01:35182189..35182213 (25 bp)
AGAGAGCTTGCTGTGCTGAACTCCA
LOC_Os01g60260
Os.14790.1.S1_at--103--9511Chr01:35182252..35182276 (25 bp)
TCTCCCTTCAGCAATGGTAGCACAA
LOC_Os01g60260
Os.14790.1.S1_at--977--5151Chr01:35182287..35182311 (25 bp)
GCAATGACTTTGTGATTCCAACCCC
LOC_Os01g60260
Os.14790.1.S1_at--247--2931Chr01:35182325..35182349 (25 bp)
AAGGCGCTCTAATCAACTTGCTTTC
LOC_Os01g60260
Os.14790.1.S1_at--1048--5651Chr01:35182352..35182376 (25 bp)
GACATAGAATCCTGCTTTACATTGC
LOC_Os01g60260
Os.14790.1.S1_at--913--5691Chr01:35182491..35182515 (25 bp)
GACTAGTTGAATCTCCATGGCTGTA
LOC_Os01g60260
Os.14790.1.S1_at--990--6811Chr01:35182534..35182558 (25 bp)
GTTTCTTTACCATCGACTGTTAGTT
LOC_Os01g60260
Os.14790.1.S1_at--907--5211Chr01:35182624..35182648 (25 bp)
GAATTTTCAACCTATGCCTGTGCAA
LOC_Os01g60260
Os.14790.1.S1_at--595--6451Chr01:35182667..35182691 (25 bp)
GATCACATATATCTCCTGCAGGTCT
LOC_Os01g60260
Os.14790.1.S1_at--662--6411Chr01:35182692..35182716 (25 bp)
GATCTGCTACTTATGTCCTGTTTCA
LOC_Os01g60260
Os.14790.1.S1_at--59--7011NONE
GTACTTCTGGTTTTGCGTTTCGCTC
NONE
Target Sequence 
AGAGAGCTTGCTGTGCTGAACTCCACATATCGAGAGGATAGCCCCCATCAAAATGGCAGTGCCTCTCCCTTCAGCAATGG
TAGCACAAAACTCGGGAAGCAATGACTTTGTGATTCCAACCCCCTTGATCCCTCCAAAGGCGCTCTAATCAACTTGCTTT
CATGACATAGAATCCTGCTTTACATTGCATAGATTTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTT
TGCTATTGCTAGCTGCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAATCTCCAT
GGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGATGACTATGGTGACAGTGCACTGAGTT
GCCAAAGTTTTACCTAAGGTAGTAGAAGAATACCAGAATTTTCAACCTATGCCTGTGCAACATATATTTCGTGTTCTTGA
TCACATATATCTCCTGCAGGTCTGATCTGCTACTTATGTCCTGTTTCATCTGCCCTTGTACTTCTGGTTTTGCGTTTCGC
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis