Browse Element(s) Details


Os.14803.1.S1_at

Description gb:AK066942.1
DB_XREF= gi:32976960
TID=Os.14803.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.14803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088D22, full insert sequence.
FL= gb:AK066942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4071011/11circadian clock coupling factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein
LOC_Os07g40680NANA7+24375158..24376371retrotransposon protein, putative, unclassified
LOC_Os07g40690Os.46924.1.S1_at11/117+24382713..24384966NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40700Os.35300.1.S1_at10/117+24387459..24391897tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14803.1.S1_at--467--8191Chr07:24395707..24395731 (25 bp)
GGCAAGGTTCCATCCAAGCGAGTCA
LOC_Os07g40710
Os.14803.1.S1_at--353--2671Chr07:24395722..24395746 (25 bp)
AAGCGAGTCATGTCCCTACTGTAAG
LOC_Os07g40710
Os.14803.1.S1_at--287--4331Chr07:24395799..24395823 (25 bp)
CCAGGCTTGGTGCTTACGAGGATTC
LOC_Os07g40710
Os.14803.1.S1_at--346--8972Chr07:24398743..24398767 (25 bp)
TGAAACCCTGGATTCGTGCATGCTG
LOC_Os07g40710
Os.14803.1.S1_at--503--7332Chr07:24398758..24398782 (25 bp)
GTGCATGCTGTTCGTTGCTGAATCT
LOC_Os07g40710
Os.14803.1.S1_at--983--9111Chr07:24398773..24398797 (25 bp)
TGCTGAATCTTTGGTTGCGACTAAC
LOC_Os07g40710
Os.14803.1.S1_at--522--5291Chr07:24398847..24398871 (25 bp)
GAATGGCTTTGCATCGCAGTGTTGT
LOC_Os07g40710
Os.14803.1.S1_at--1142--5011Chr07:24398862..24398886 (25 bp)
GCAGTGTTGTTCTTCCTGAAACTTT
LOC_Os07g40710
Os.14803.1.S1_at--270--331Chr07:24398916..24398940 (25 bp)
ATACTGTTCTCTCCTTTATCATTGA
LOC_Os07g40710
Os.14803.1.S1_at--828--9031Chr07:24398952..24398976 (25 bp)
TGCTTCCCCTAATTGTAACCGAGAC
LOC_Os07g40710
Os.14803.1.S1_at--750--3191Chr07:24398979..24399003 (25 bp)
CAATCTCCTGTCATGTCCTATATGT
LOC_Os07g40710
Target Sequence 
GGCAAGGTTCCATCCAAGCGAGTCATGTCCCTACTGTAAGGCTAAGCTGTGGAGCATGTTGGAAGCAAATATGTCGCCGG
GGAGTTCTTCTGCCAGGCTTGGTGCTTACGAGGATTCTGTGGAGTATTTTGTATGCCTGAACGGACATGTCATTGGAATT
GGTACCCTTCTACCTCTGTCTGATTCTGAGGAAGTACCAGAGGAGTAGTAATCAGGAACTTGAATCAGGTTTGCAAGACT
GAAACCCTGGATTCGTGCATGCTGTTCGTTGCTGAATCTTTGGTTGCGACTAACAGTGGGAGAATGCATGCGCAAGGCGA
CCTGCAGGTCTGCAGGATGACAAGAATGGCTTTGCATCGCAGTGTTGTTCTTCCTGAAACTTTGCATCAGATGGGGAAAA
AAAGCTATTTTTATACTGTTCTCTCCTTTATCATTGATGCCTCATCCCTGCTTCCCCTAATTGTAACCGAGACACCAATC
TCCTGTCATGTCCTATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis