Browse Element(s) Details


OsAffx.5588.1.A1_at

Description tigr:9635.m04069
TID=OsAffx.5588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4071011/11circadian clock coupling factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein
LOC_Os07g40680NANA7+24375158..24376371retrotransposon protein, putative, unclassified
LOC_Os07g40690Os.46924.1.S1_at11/117+24382713..24384966NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40700Os.35300.1.S1_at10/117+24387459..24391897tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5588.1.A1_at--599--572Chr07:24396952..24396976 (25 bp)
ATCCATGGCCGCTGGAGGTTGACGC
LOC_Os07g40710
OsAffx.5588.1.A1_at--1072--4691Chr07:24396962..24396986 (25 bp)
GCTGGAGGTTGACGCGAGGGAGGTT
LOC_Os07g40710
OsAffx.5588.1.A1_at--236--1511Chr07:24397078..24397102 (25 bp)
AGCACGCACTTGCTGGCGGTCATCA
LOC_Os07g40710
OsAffx.5588.1.A1_at--449--5091Chr07:24397079..24397103 (25 bp)
GCACGCACTTGCTGGCGGTCATCAG
LOC_Os07g40710
OsAffx.5588.1.A1_at--233--2071Chr07:24397085..24397109 (25 bp)
ACTTGCTGGCGGTCATCAGCGTGCT
LOC_Os07g40710
OsAffx.5588.1.A1_at--1093--9591Chr07:24397097..24397121 (25 bp)
TCATCAGCGTGCTCATCGGTTGCGG
LOC_Os07g40710
OsAffx.5588.1.A1_at--1033--391Chr07:24397099..24397123 (25 bp)
ATCAGCGTGCTCATCGGTTGCGGGT
LOC_Os07g40710
OsAffx.5588.1.A1_at--242--9091Chr07:24397106..24397130 (25 bp)
TGCTCATCGGTTGCGGGTGGTTCGG
LOC_Os07g40710
OsAffx.5588.1.A1_at--749--4071Chr07:24397316..24397340 (25 bp)
CGAGAAGTACTTGGACCATCACGAC
LOC_Os07g40710
OsAffx.5588.1.A1_at--178--1451Chr07:24397318..24397342 (25 bp)
AGAAGTACTTGGACCATCACGACCA
LOC_Os07g40710
OsAffx.5588.1.A1_at--717--5331Chr07:24397319..24397343 (25 bp)
GAAGTACTTGGACCATCACGACCAA
LOC_Os07g40710
Target Sequence 
ATCCATGGCCGCTGGAGGTTGACGCGAGGGAGGTTGCGAGGAGGTCGGCGCGATGGTGGCGGTGGAGGAGGAGGCGCGCA
CGGGCTGCCGTTCCTGGTGCTCGCGCGTACGGCGTTCGGGGTGCGCAGCACGCACTTGCTGGCGGTCATCAGCGTGCTCA
TCGGTTGCGGGTGGTTCGGCATCGAATCCTGGATCGGTGGCCGCGCCGTGTTCCTCCTCCTGCCGTCCAGGCTCAAGTCG
TACCAGCCGCTGCTCGCGCCAGTGCCAGGCCTGGGGCTGCGCCGCTGGAGTTCGCGTGCTTCCTCGCTTTCTGGGCCGCG
CAGCTCGGCGTCATCATGCACGGCATGGAGGGCATCAGCAAGCTCGAGAAGTACTTGGACCATCACGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5588.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis