Browse Element(s) Details


Os.46924.1.S1_at

Description gb:AK106089.1
DB_XREF= gi:32991298
TID=Os.46924.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B06, full insert sequence.
FL= gb:AK106089.1 gb:AK070781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4069011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40650Os.35344.18.S1_x_at11/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650Os.35344.3.S1_x_at9/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650OsAffx.22940.5.S1_x_at3/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40660NANA7+24368962..24369348D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein
LOC_Os07g40680NANA7+24375158..24376371retrotransposon protein, putative, unclassified
LOC_Os07g40690Os.46924.1.S1_at11/117+24382713..24384966NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40700Os.35300.1.S1_at10/117+24387459..24391897tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46924.1.S1_at--59--9511Chr07:24384184..24384208 (25 bp)
TCATCGGCCAGGAGTCTTACCACGG
LOC_Os07g40690
Os.46924.1.S1_at--1006--1931Chr07:24384205..24384229 (25 bp)
ACGGCGGACTCAAGTACCTGCAGGC
LOC_Os07g40690
Os.46924.1.S1_at--725--4391Chr07:24384372..24384396 (25 bp)
GCCAAGTATCCGGAGATCACGATCA
LOC_Os07g40690
Os.46924.1.S1_at--827--1271Chr07:24384385..24384407 (23 bp)
AGATCACGATCAAGCTCCGAGAGGT
LOC_Os07g40690
Os.46924.1.S1_at--82--4751Chr07:24384675..24384699 (25 bp)
GCTGATACAAACAAGCTCACGGATT
LOC_Os07g40690
Os.46924.1.S1_at--248--6591Chr07:24384769..24384793 (25 bp)
GATTGCTGTGATATGCGGCTGTTGC
LOC_Os07g40690
Os.46924.1.S1_at--14--10151Chr07:24384780..24384804 (25 bp)
TATGCGGCTGTTGCGTTGCTCGTTG
LOC_Os07g40690
Os.46924.1.S1_at--161--9091Chr07:24384796..24384820 (25 bp)
TGCTCGTTGGTGTTTAGTAATTTGC
LOC_Os07g40690
Os.46924.1.S1_at--1134--3111Chr07:24384814..24384838 (25 bp)
AATTTGCGTATGTGTAGTTGGCACC
LOC_Os07g40690
Os.46924.1.S1_at--213--7411Chr07:24384825..24384849 (25 bp)
GTGTAGTTGGCACCGATTTGGACCC
LOC_Os07g40690
Os.46924.1.S1_at--511--791Chr07:24384852..24384876 (25 bp)
ATGTGTTTGTGCCTTTATGCTAAAA
LOC_Os07g40690
Target Sequence 
TCATCGGCCAGGAGTCTTACCACGGCGGACTCAAGTACCTGCAGGCGCTGCTCGGCTCCGTGCCGCTGGCGCACATCGAC
GACGTCTGCGACGCGCACGTCTTCTGCATGGAGCAGCCGTCCATCGCCGGCCGTTTCCTCTGCGCCGCCGGGTACCCCAA
CATGAAGGACTTCGTCGACCACTTCTCCGCCAAGTATCCGGAGATCACGATCAAGCTCCGAGAGGTGGTAGGGGAGGGCG
TGAGGGTGGGAGCTGATACAAACAAGCTCACGGATTTGGGGTTCAGATACAAGTATGGGGTGGAGGAGACGCTGGAAGGT
AGTGTGGAATGCGCCAAGAGAATGGGATTGCTGTGATATGCGGCTGTTGCGTTGCTCGTTGGTGTTTAGTAATTTGCGTA
TGTGTAGTTGGCACCGATTTGGACCCANATGTGTTTGTGCCTTTATGCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis