Browse Element(s) Details


Os.35300.1.S1_at

Description gb:AK068136.1
DB_XREF= gi:32978154
TID=Os.35300.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134J21, full insert sequence.
FL= gb:AK068136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4070010/11tRNA/rRNA methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40650Os.35344.18.S1_x_at11/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650Os.35344.3.S1_x_at9/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650OsAffx.22940.5.S1_x_at3/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40660NANA7+24368962..24369348D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein
LOC_Os07g40680NANA7+24375158..24376371retrotransposon protein, putative, unclassified
LOC_Os07g40690Os.46924.1.S1_at11/117+24382713..24384966NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40700Os.35300.1.S1_at10/117+24387459..24391897tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35300.1.S1_at--849--1491Chr07:24390649..24390673 (25 bp)
AGCACAGCTGGCATAGTTCACGAAT
LOC_Os07g40700
Os.35300.1.S1_at--972--3911Chr07:24390798..24390822 (25 bp)
CTGGCTCTGGCATATCATTTTTGAC
LOC_Os07g40700
Os.35300.1.S1_at--197--1511NONE
AGCAGCTGGCTTTTTACGGAGAGGA
NONE
Os.35300.1.S1_at--489--6191Chr07:24391506..24391530 (25 bp)
GAGGAACTATCAGGCTGCTTGACCA
LOC_Os07g40700
Os.35300.1.S1_at--357--10171Chr07:24391587..24391611 (25 bp)
TATCAGAGTATCAAGCTATCGCATT
LOC_Os07g40700
Os.35300.1.S1_at--440--4031Chr07:24391737..24391761 (25 bp)
CGTTCGCTAGAACCCCAGTTGATAA
LOC_Os07g40700
Os.35300.1.S1_at--64--10251Chr07:24391771..24391795 (25 bp)
TTTAACTACTGCCTTTTACCGCGAT
LOC_Os07g40700
Os.35300.1.S1_at--512--4451Chr07:24391781..24391805 (25 bp)
GCCTTTTACCGCGATGTGAGACACT
LOC_Os07g40700
Os.35300.1.S1_at--150--5991Chr07:24391798..24391822 (25 bp)
GAGACACTGCACTCAGAACTCAACT
LOC_Os07g40700
Os.35300.1.S1_at--577--5451Chr07:24391813..24391837 (25 bp)
GAACTCAACTCTCTTAGCGATTTAA
LOC_Os07g40700
Os.35300.1.S1_at--924--731Chr07:24391842..24391866 (25 bp)
ATGTTTTCTCTCTCGGATTGTTCAC
LOC_Os07g40700
Target Sequence 
AGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATA
GTTACTGAAGGAGAAATATACACAACCTAGGTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGC
ATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGA
TGACTTCAGAACAGAATTTTTTGACAGGACTATGATNTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATT
ACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGNTGTTGTTTTGGATGCTGACATAT
AAGAAAGGATNGATGCAGCTTTNTCTCCGTTCGCTAGAACCCCAGTTGATAATTTTTAGAGTTTAACTACTGCCTTTTAC
CGCGATGTGAGACACTGCACTCAGAACTCAACTCTCTTAGCGATTTAATGTCATGTTTTCTCTCTCGGATTGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis