Browse Element(s) Details


Os.14828.1.A1_s_at

Description gb:CR286273
DB_XREF= gi:44672839
DB_XREF=CR286273
CLONE=y739b12p3
TID=Os.14828.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14828 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2039011/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20370OsAffx.6343.1.S1_at11/119+12227336..12228583hypothetical protein
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class
LOC_Os09g20390OsAffx.17798.1.S1_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.1.A1_s_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.2.A1_at6/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14828.1.A1_s_at--1113--9211Chr09:12252677..12252701 (25 bp)
TCCAGGACACGGTTGAGGCTGTAAC
LOC_Os09g20390
Os.14828.1.A1_s_at--692--131Chr09:12252762..12252786 (25 bp)
ATTACATCGGCAGGGTAACCCGTGA
LOC_Os09g20390
Os.14828.1.A1_s_at--300--9811Chr09:12252777..12252801 (25 bp)
TAACCCGTGACGCTGATCGATCGTG
LOC_Os09g20390
Os.14828.1.A1_s_at--824--6391Chr09:12252791..12252815 (25 bp)
GATCGATCGTGGATTCTACACCAAC
LOC_Os09g20390
Os.14828.1.A1_s_at--621--3311Chr09:12252815..12252839 (25 bp)
CACAGGTGCTCGAAAATGGTGTCCA
LOC_Os09g20390
Os.14828.1.A1_s_at--739--811Chr09:12252830..12252854 (25 bp)
ATGGTGTCCACATTGCAGAAGCGCA
LOC_Os09g20390
Os.14828.1.A1_s_at--350--1971Chr09:12252887..12252911 (25 bp)
ACTGATGGCTGTCTGGCCATTGTTG
LOC_Os09g20390
Os.14828.1.A1_s_at--205--8431Chr09:12252901..12252925 (25 bp)
GGCCATTGTTGTGCCATAATCCTGT
LOC_Os09g20390
Os.14828.1.A1_s_at--394--4331Chr09:12252914..12252938 (25 bp)
CCATAATCCTGTTTAGTTCTTCACC
LOC_Os09g20390
Os.14828.1.A1_s_at--186--2651Chr09:12252986..12253010 (25 bp)
AACCATGTAAATTCCGTACTACTAG
LOC_Os09g20390
Os.14828.1.A1_s_at--1109--4011Chr09:12253000..12253024 (25 bp)
CGTACTACTAGTACCTTGTCATGCA
LOC_Os09g20390
Target Sequence 
TCCAGGACACGGTTGAGGCTGTAACNNNNNNNNNNCATNTGNNNNNNNNNAATTTAACCGGCGAGGCTAGCTAGAGAGAA
GCGCGTGATCTGGNGCCGTCCNAGCGATTACATCGGCAGGGTAACCCGTGACGCTGATCGATCGTGGATTCTACACCAAC
ACAGGTGCTCGAAAATGGTGTCCACATTGCAGAAGCGCAGAGAGCTAATTAATCAACGACGGACGAGAGANACTGATGGC
TGTCTGGCCATTGTTGTGCCATAATCCTGTTTAGTTCTTCACCTNNNNNNNTTCTCCCTTCTTCTTTTTTCCCATTTGGG
GCCCCCCTTTTGGTACCAACCATGTAAATTCCGTACTACTAGTACCTTGTCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14828.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis