Browse Element(s) Details


OsAffx.17798.1.S1_at

Description tigr:9637.m01738
TID=OsAffx.17798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=trehalose-phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2039011/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20370OsAffx.6343.1.S1_at11/119+12227336..12228583hypothetical protein
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class
LOC_Os09g20390OsAffx.17798.1.S1_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.1.A1_s_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.2.A1_at6/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17798.1.S1_at--225--3251Chr09:12252400..12252424 (25 bp)
CAACGTACGTCTTCTTCTACGTTGG
LOC_Os09g20390
OsAffx.17798.1.S1_at--56--6991Chr09:12252404..12252428 (25 bp)
GTACGTCTTCTTCTACGTTGGACTA
LOC_Os09g20390
OsAffx.17798.1.S1_at--189--1891Chr09:12252406..12252430 (25 bp)
ACGTCTTCTTCTACGTTGGACTAAT
LOC_Os09g20390
OsAffx.17798.1.S1_at--364--7131Chr09:12252408..12252432 (25 bp)
GTCTTCTTCTACGTTGGACTAATCG
LOC_Os09g20390
OsAffx.17798.1.S1_at--1099--10531Chr09:12252411..12252435 (25 bp)
TTCTTCTACGTTGGACTAATCGGCG
LOC_Os09g20390
OsAffx.17798.1.S1_at--687--10571Chr09:12252414..12252438 (25 bp)
TTCTACGTTGGACTAATCGGCGAGC
LOC_Os09g20390
OsAffx.17798.1.S1_at--52--3731Chr09:12252416..12252440 (25 bp)
CTACGTTGGACTAATCGGCGAGCCG
LOC_Os09g20390
OsAffx.17798.1.S1_at--210--1891Chr09:12252418..12252442 (25 bp)
ACGTTGGACTAATCGGCGAGCCGTG
LOC_Os09g20390
OsAffx.17798.1.S1_at--598--491Chr09:12252429..12252453 (25 bp)
ATCGGCGAGCCGTGTGCATGATCCG
LOC_Os09g20390
OsAffx.17798.1.S1_at--415--4251Chr09:12252438..12252462 (25 bp)
CCGTGTGCATGATCCGGGCAGGTTT
LOC_Os09g20390
OsAffx.17798.1.S1_at--409--7051Chr09:12252697..12252721 (25 bp)
GTAACAATTGAATTTAACCGGCGAG
LOC_Os09g20390
Target Sequence 
CAACGTACGTCTTCTTCTACGTTGGACTAATCGGCGAGCCGTGTGCATGATCCGGGCAGGTTTTGCGGCGGCGTGGGCAG
GGCGTGGGGATCCTGGTGTCCAAGCACCCCAAGGAGACGAGCGCCTCCTTCTCCCTCCAGGAGCCCGCCGAGGTGATGGA
GTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTGTAACAATTGAATTTAACCGGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis