Browse Element(s) Details


Os.54488.2.S1_at

Description gb:AK105322.1
DB_XREF= gi:32990531
TID=Os.54488.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G10, full insert sequence.
FL= gb:AK105322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2040011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class
LOC_Os09g20390OsAffx.17798.1.S1_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.1.A1_s_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.2.A1_at6/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein
LOC_Os09g20410OsAffx.29938.1.S1_at11/119+12278794..12279745hypothetical protein
LOC_Os09g20420OsAffx.7080.2.A1_at11/119+12283152..12284276hypothetical protein
LOC_Os09g20430Os.18154.1.S1_at10/119+12288982..12293954SCO1/SenC family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54488.2.S1_at--323--4371Chr09:12265560..12265584 (25 bp)
CCACGCAGCAAGGTATTCCAATTAA
LOC_Os09g20400
Os.54488.2.S1_at--1019--131Chr09:12265540..12265564 (25 bp)
ATTAACATGCAAATTAGAACGCGTG
LOC_Os09g20400
Os.54488.2.S1_at--1005--1431Chr09:12265525..12265549 (25 bp)
AGAACGCGTGTGATTACCAATTAAT
LOC_Os09g20400
Os.54488.2.S1_at--167--3151Chr09:12265490..12265514 (25 bp)
AATTACATATTGTGCGATGCGTATC
LOC_Os09g20400
Os.54488.2.S1_at--560--4631Chr09:12265477..12265501 (25 bp)
GCGATGCGTATCAAATTATCTTCAT
LOC_Os09g20400
Os.54488.2.S1_at--1124--3291Chr09:12265466..12265490 (25 bp)
CAAATTATCTTCATGCATGCGTGCA
LOC_Os09g20400
Os.54488.2.S1_at--421--4991Chr09:12265452..12265476 (25 bp)
GCATGCGTGCATATATACTAGGTTG
LOC_Os09g20400
Os.54488.2.S1_at--366--331Chr09:12265438..12265462 (25 bp)
ATACTAGGTTGATTACTGTACACAA
LOC_Os09g20400
Os.54488.2.S1_at--731--3576Chr11:24580696..24580772 (25 bp)
CATTAGTTAGAGCAGGTACATAGCA
NONE
Os.54488.2.S1_at--794--351Chr09:12265363..12265387 (25 bp)
ATAAGCCGAATATGATACGCGATGA
LOC_Os09g20400
Os.54488.2.S1_at--804--5151Chr09:12265319..12265343 (25 bp)
GCAAGCTATTTGTATCTAGCTGTAA
LOC_Os09g20400
Target Sequence 
CCACGCAGCAAGGTATTCCAATTAACATGCAAATTAGAACGCGTGTGATTACCAATTAATCCTACTAGTTAATTACATAT
TGTGCGATGCGTATCAAATTATCTTCATGCATGCGTGCATATATACTAGGTTGATTACTGTACACAACAACATGTACTAG
ATCAAAAACATTAGTTAGAGCAGGTACATAGCAAGCTATAAGCCGAATATGATACGCGATGAAAAGAGAAGAGAGAAGAA
AGCAAGCTATTTGTATCTAGCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54488.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis