Browse Element(s) Details


Os.18154.1.S1_at

Description gb:AK064804.1
DB_XREF= gi:32974822
TID=Os.18154.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000D13, full insert sequence.
FL= gb:AK064804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2043010/11SCO1/SenC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein
LOC_Os09g20410OsAffx.29938.1.S1_at11/119+12278794..12279745hypothetical protein
LOC_Os09g20420OsAffx.7080.2.A1_at11/119+12283152..12284276hypothetical protein
LOC_Os09g20430Os.18154.1.S1_at10/119+12288982..12293954SCO1/SenC family protein, expressed
LOC_Os09g20440Os.55495.1.S1_at11/119+12294673..12297188succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed
LOC_Os09g20450NANA9+12304525..12309172transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g20460NANA9+12318666..12319982VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18154.1.S1_at--824--851Chr09:12290447..12290471 (25 bp)
ATGGCACCAAGATTACACCACTCTT
LOC_Os09g20430
Os.18154.1.S1_at--947--51Chr09:12290415..12290439 (25 bp)
ATTGATCCTCAACGTGATTCACCTG
LOC_Os09g20430
Os.18154.1.S1_at--66--6571Chr09:12290400..12290424 (25 bp)
GATTCACCTGCTCAGCTTAAGGCAT
LOC_Os09g20430
Os.18154.1.S1_at--278--4951Chr09:12290294..12290403 (25 bp)
GCATATCTTAGTGAGTTTGACCCAA
LOC_Os09g20430
Os.18154.1.S1_at--350--5711Chr09:12290260..12290284 (25 bp)
GACTAACGGGATCCATCAATGCAGT
LOC_Os09g20430
Os.18154.1.S1_at--696--751NONE
ATGTACTTGCTAGATCCATGCTTGG
NONE
Os.18154.1.S1_at--783--2391Chr09:12289958..12289982 (25 bp)
AAACTAGTGTAGCTGCCCATTGTCT
LOC_Os09g20430
Os.18154.1.S1_at--562--5831Chr09:12289192..12289216 (25 bp)
GACCTAGTTCGGCACAATCCAATGT
LOC_Os09g20430
Os.18154.1.S1_at--551--811Chr09:12289110..12289134 (25 bp)
ATGGTGAACCTCTCATTTAGCTCTG
LOC_Os09g20430
Os.18154.1.S1_at--447--9311Chr09:12289061..12289085 (25 bp)
TCCCCGCTCCTTTGTGTGTAAGAAT
LOC_Os09g20430
Os.18154.1.S1_at--703--3131Chr09:12289003..12289027 (25 bp)
AATTTTCCAGCTACGATTCACTTGC
LOC_Os09g20430
Target Sequence 
ATGGCACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGT
GAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTT
CAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGA
CAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAA
TCATCAACAAACTAGTGTAGCTGCCCATTGTCTTNGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTT
TCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTC
CAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCT
ACGATTCACTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis