Browse Element(s) Details


OsAffx.7080.2.A1_at

Description tigr:9637.m01742
TID=OsAffx.7080.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 26643-27671
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2042011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein
LOC_Os09g20410OsAffx.29938.1.S1_at11/119+12278794..12279745hypothetical protein
LOC_Os09g20420OsAffx.7080.2.A1_at11/119+12283152..12284276hypothetical protein
LOC_Os09g20430Os.18154.1.S1_at10/119+12288982..12293954SCO1/SenC family protein, expressed
LOC_Os09g20440Os.55495.1.S1_at11/119+12294673..12297188succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed
LOC_Os09g20450NANA9+12304525..12309172transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7080.2.A1_at--500--9271Chr09:12283717..12283741 (25 bp)
TCCGGCTCAAGGTGCGCTGCTTCGG
LOC_Os09g20420
OsAffx.7080.2.A1_at--651--1491Chr09:12283816..12283840 (25 bp)
AGCACGAAGCCGTGTCCGCCGGATG
LOC_Os09g20420
OsAffx.7080.2.A1_at--397--4531Chr09:12283851..12283875 (25 bp)
GCCGCCTCGAGCGTGTTCTCGAAGT
LOC_Os09g20420
OsAffx.7080.2.A1_at--69--9371Chr09:12283857..12283881 (25 bp)
TCGAGCGTGTTCTCGAAGTGGCTCA
LOC_Os09g20420
OsAffx.7080.2.A1_at--613--9111Chr09:12283885..12283909 (25 bp)
TGCTGGAAGGCAGCGAAGAGACACC
LOC_Os09g20420
OsAffx.7080.2.A1_at--778--9431Chr09:12284025..12284049 (25 bp)
TCGGCGCCGGCGAAAGGACTAGCAA
LOC_Os09g20420
OsAffx.7080.2.A1_at--115--5571Chr09:12284036..12284060 (25 bp)
GAAAGGACTAGCAAGGAGACGAACA
LOC_Os09g20420
OsAffx.7080.2.A1_at--885--5991Chr09:12284051..12284075 (25 bp)
GAGACGAACAGAGGAGCCACCGCCA
LOC_Os09g20420
OsAffx.7080.2.A1_at--840--1391Chr09:12284153..12284177 (25 bp)
AGACGAGCTGGTGTTCATGCGGACG
LOC_Os09g20420
OsAffx.7080.2.A1_at--11--8411Chr09:12284177..12284201 (25 bp)
GGCGCCGGATTTCCTGAAGCTGTCC
LOC_Os09g20420
OsAffx.7080.2.A1_at--577--5411Chr09:12284192..12284216 (25 bp)
GAAGCTGTCCATAGACATCGCCAAG
LOC_Os09g20420
Target Sequence 
TCCGGCTCAAGGTGCGCTGCTTCGGGTCGCTCCACGGCGCGGTGGAGTCCTCCACCGACGACGAAGACGACGACGACGAC
GACGGCCGCGGCGCGGAGGAGCACGAAGCCGTGTCCGCCGGATGCGGCGGCAGCGCCGCCTCGAGCGTGTTCTCGAAGTG
GCTCATGGTGCTGGAAGGCAGCGAAGAGACACCGGAGCAGGACTCCGGCGACGACGAGGAGGAGCCCGAGCGAGAAGACG
ACGACGAGTGCTCCAATGCGCCGCCGTCCGCCCCACCGGCGAACGCGCTGCTGCTCATGCGGTGCCGGTCGGCGCCGGCG
AAAGGACTAGCAAGGAGACGAACAGAGGAGCCACCGCCACCGGTCGGCGAGGCGGTGCACGACGAGGGAAGCGCGGCCGC
CGCCGCCGCGGGGGACGACGGCGCAGAGGAGGAGAGAGACGAGCTGGTGTTCATGCGGACGGCGCCGGATTTCCTGAAGC
TGTCCATAGACATCGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7080.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis