Browse Element(s) Details


OsAffx.29938.1.S1_at

Description tigr:9637.m01741
TID=OsAffx.29938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2041011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein
LOC_Os09g20410OsAffx.29938.1.S1_at11/119+12278794..12279745hypothetical protein
LOC_Os09g20420OsAffx.7080.2.A1_at11/119+12283152..12284276hypothetical protein
LOC_Os09g20430Os.18154.1.S1_at10/119+12288982..12293954SCO1/SenC family protein, expressed
LOC_Os09g20440Os.55495.1.S1_at11/119+12294673..12297188succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed
LOC_Os09g20450NANA9+12304525..12309172transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29938.1.S1_at--1032--7571Chr09:12279633..12279657 (25 bp)
GGGCTGGTCGGTTTTGCAAGCTCCA
LOC_Os09g20410
OsAffx.29938.1.S1_at--371--5171Chr09:12279618..12279642 (25 bp)
GCAAGCTCCAGTGGCTTTATTGTGG
LOC_Os09g20410
OsAffx.29938.1.S1_at--1106--9151Chr09:12279505..12279529 (25 bp)
TGCCGCTTGCAACCATCCAAAAGGG
LOC_Os09g20410
OsAffx.29938.1.S1_at--451--10851Chr09:12279478..12279502 (25 bp)
TTGGTGTGGCCATCGCCTCGTCATT
LOC_Os09g20410
OsAffx.29938.1.S1_at--68--9411Chr09:12279461..12279485 (25 bp)
TCGTCATTTGTTCTGCTCTTCTGCC
LOC_Os09g20410
OsAffx.29938.1.S1_at--225--8731Chr09:12279435..12279459 (25 bp)
TGTCTCGTGCTCAACGTCCTATAAG
LOC_Os09g20410
OsAffx.29938.1.S1_at--543--2571Chr09:12279423..12279447 (25 bp)
AACGTCCTATAAGTGTCTTGGTGAT
LOC_Os09g20410
OsAffx.29938.1.S1_at--954--6711Chr09:12279166..12279410 (25 bp)
GTTCGTCGAGGCGACAACTACAACA
LOC_Os09g20410
OsAffx.29938.1.S1_at--352--3911Chr09:12279112..12279136 (25 bp)
CTGGTTGGCAATGCTAGTGATGGAT
LOC_Os09g20410
OsAffx.29938.1.S1_at--604--8811Chr09:12278916..12279079 (25 bp)
TGTTGTATTGTATCCGAGCTGTCGA
LOC_Os09g20410
OsAffx.29938.1.S1_at--536--8571Chr09:12278825..12278849 (25 bp)
TGGATTCCATATCAAGATCGACTTG
LOC_Os09g20410
Target Sequence 
GGGCTGGTCGGTTTTGCAAGCTCCAGTGGCTTTATTGTGGGGTGGTCAGCGGCGTGCCGCTTGCAACCATCCAAAAGGGG
GTTGGTGTGGCCATCGCCTCGTCATTTGTTCTGCTCTTCTGCCCTGTCTCGTGCTCAACGTCCTATAAGTGTCTTGGTGA
TGGTGACTGGATGGTTCGTCGAGGCGACAACTACAACAAGGAGCGGCATTGGCAGGATGAAGGCAAGCTGGTTGGCAATG
CTAGTGATGGATGGGGTGCGACATTGGATCTGGGGCCTAAATGTTGTTGTATTGTATCCGAGCTGTCGATAGGGATATGG
TGGGGAAAGGAGCGAATCAAATATGGATGTAACGTGGATGAGGAGTATAGGAGTTTGGATTCCATATCAAGATCGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis