Browse Element(s) Details


Os.14828.2.A1_at

Description gb:BX927936
DB_XREF= gi:41882471
DB_XREF=BX927936
CLONE=p668h08p3
TID=Os.14828.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14828 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g203906/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20370OsAffx.6343.1.S1_at11/119+12227336..12228583hypothetical protein
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class
LOC_Os09g20390OsAffx.17798.1.S1_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.1.A1_s_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.2.A1_at6/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14828.2.A1_at--75--8071Chr09:12252539..12252563 (25 bp)
GGAGCCCGCCGAGGTAATTAAGCAA
LOC_Os09g20390
Os.14828.2.A1_at--1120--5851Chr09:12252540..12252564 (25 bp)
GAGCCCGCCGAGGTAATTAAGCAAA
LOC_Os09g20390
Os.14828.2.A1_at--435--7051Chr09:12252552..12252576 (25 bp)
GTAATTAAGCAAAACCACTCGTACG
LOC_Os09g20390
Os.14828.2.A1_at--905--10471Chr09:12252556..12252580 (25 bp)
TTAAGCAAAACCACTCGTACGCACG
LOC_Os09g20390
Os.14828.2.A1_at--1120--2351Chr09:12252563..12252587 (25 bp)
AAACCACTCGTACGCACGCATGAAA
LOC_Os09g20390
Os.14828.2.A1_at--286--4371Chr09:12252566..12252590 (25 bp)
CCACTCGTACGCACGCATGAAAACG
LOC_Os09g20390
Os.14828.2.A1_at--186--8351NONE
GGCTGTAACAATTGATGATCATCTG
NONE
Os.14828.2.A1_at--832--51NONE
ATTGATGATCATCTGGCATCAGCTA
NONE
Os.14828.2.A1_at--460--711NONE
ATGATCATCTGGCATCAGCTAATTT
NONE
Os.14828.2.A1_at--861--451NONE
ATCTGGCATCAGCTAATTTAACCGG
NONE
Os.14828.2.A1_at--1137--8251NONE
GGCATCAGCTAATTTAACCGGCGAG
NONE
Target Sequence 
GGAGCCCGCCGAGGTAATTAAGCAAAACCACTCGTACGCACGCATGAAAACGNTTCNTATCACTCTGCTCATGTTTGTGT
NGCAATTGCGACANCAGGTGATGGAGTTCTTGCTGCGGCTCGTGGAGTGGAATCGCCTGTCCAGGACACGGTTGAGGCTG
TAACAATTGATGATCATCTGGCATCAGCTAATTTAACCGGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14828.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis