Browse Element(s) Details


Os.14946.1.S1_at

Description gb:AK121451.1
DB_XREF= gi:37991074
TID=Os.14946.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142K21, full insert sequence.
FL= gb:AK064325.1 gb:AK121451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0492011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04900OsAffx.3135.1.S1_at11/113+2321269..2322222Myb-like DNA-binding domain containing protein
LOC_Os03g04900Os.57514.1.S1_x_at1/113+2321269..2322222Myb-like DNA-binding domain containing protein
LOC_Os03g04910Os.40360.1.S1_x_at1/113+2336410..2337645hypothetical protein
LOC_Os03g04920Os.14946.1.S1_at11/113+2346967..2353621ABC transporter family protein, putative, expressed
LOC_Os03g04930Os.9536.1.S1_at11/113+2354327..2357146pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g04940Os.49308.1.A1_at11/113+2359148..2363763expressed protein
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14946.1.S1_at--1022--10771Chr03:2352957..2352981 (25 bp)
TTGATAGTGACCTAGTCCTGGTGCT
LOC_Os03g04920
Os.14946.1.S1_at--195--3171Chr03:2353111..2353135 (25 bp)
AATTGCAGAGTTTGACACACCCCAG
LOC_Os03g04920
Os.14946.1.S1_at--492--2851Chr03:2353151..2353175 (25 bp)
AAGTCCTCCATGTTCATGCAGCTAG
LOC_Os03g04920
Os.14946.1.S1_at--907--6891Chr03:2353175..2353199 (25 bp)
GTATCTGAATACTCAACTCGGTCAA
LOC_Os03g04920
Os.14946.1.S1_at--865--1011Chr03:2353253..2353277 (25 bp)
AGGTAGGATAGCCACATCTGCCAGT
LOC_Os03g04920
Os.14946.1.S1_at--810--8891Chr03:2353420..2353444 (25 bp)
TGAGATTACCCGAAGCTCTGATGCT
LOC_Os03g04920
Os.14946.1.S1_at--108--9831Chr03:2353455..2353479 (25 bp)
TAAACAATGCGGTACTACTTCTCCC
LOC_Os03g04920
Os.14946.1.S1_at--1149--2011Chr03:2353468..2353492 (25 bp)
ACTACTTCTCCCTTGCATAGTGGAA
LOC_Os03g04920
Os.14946.1.S1_at--933--2451Chr03:2353528..2353552 (25 bp)
AACAAGTTTCATTTTGGCACCAGAT
LOC_Os03g04920
Os.14946.1.S1_at--250--6611Chr03:2353550..2353574 (25 bp)
GATTGGAGTGCTTTGGTCTACTGTA
LOC_Os03g04920
Os.14946.1.S1_at--1--9931Chr03:2353568..2353592 (25 bp)
TACTGTATAGAACTCACCTCACCTG
LOC_Os03g04920
Target Sequence 
TTGATAGTGACCTAGTCCTGGTGCTTAGTGATGGTAAAATTGCAGAGTTTGACACACCCCAGAGGCTCTTGGAGGACAAG
TCCTCCATGTTCATGCAGCTAGTATCTGAATACTCAACTCGGTCAAGCTGTATATAGAGAGGCTTAGCTTAAAATCCCCC
ACACCAAGTAGGAACAGGGAGGTAGGATAGCCACATCTGCCAGTGGACTCACNCCATAGAAGTACCNACATCATAGGGCA
AGACACAAGCCGAGGTGTATATGAGCGGAAACAAAATGTTCCCTGACGTGAATAAACCATGGAATCGATGAGGGAACGCA
GCGGGCAGCACCACGGGAGGAGTTGGTGAGATTACCCGAAGCTCTGATGCTTCTGNATGTATAAACAATGCGGTACTACT
TCTCCCTTGCATAGTGGAAAAAGGGAAGGCAATGTTCATGGGTAATAAAGGGGTAACAAGTTTCATTTTGGCACCAGATT
GGAGTGCTTTGGTCTACTGTATAGAACTCACCTCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis