Browse Element(s) Details


OsAffx.3135.1.S1_at

Description tigr:9631.m00405
TID=OsAffx.3135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to snapdragon myb protein 305 homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0490011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04860OsAffx.22848.4.S1_at2/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04860OsAffx.22848.4.S1_x_at1/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04870Os.55673.1.S1_at10/113+2307979..2310711expressed protein
LOC_Os03g04890Os.53815.1.S1_at9/113+2315900..2320767zinc finger family protein, putative, expressed
LOC_Os03g04900OsAffx.3135.1.S1_at11/113+2321269..2322222Myb-like DNA-binding domain containing protein
LOC_Os03g04900Os.57514.1.S1_x_at1/113+2321269..2322222Myb-like DNA-binding domain containing protein
LOC_Os03g04910Os.40360.1.S1_x_at1/113+2336410..2337645hypothetical protein
LOC_Os03g04920Os.14946.1.S1_at11/113+2346967..2353621ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009740biological_processgibberellic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3135.1.S1_at--28--9151Chr03:2321941..2321965 (25 bp)
TGCGGTGGGTGAACTATCTCAGGCC
LOC_Os03g04900
OsAffx.3135.1.S1_at--1000--8971Chr03:2321932..2321956 (25 bp)
TGAACTATCTCAGGCCGGACCTGAA
LOC_Os03g04900
OsAffx.3135.1.S1_at--877--971Chr03:2321884..2321908 (25 bp)
AGGAGACCGTCATCCTCCAGCTGCA
LOC_Os03g04900
OsAffx.3135.1.S1_at--945--1511Chr03:2321582..2321606 (25 bp)
AGCAGCATCGCCAGTATCTCCATAG
LOC_Os03g04900
OsAffx.3135.1.S1_at--1051--1191Chr03:2321570..2321594 (25 bp)
AGTATCTCCATAGCCTGAACCTTCT
LOC_Os03g04900
OsAffx.3135.1.S1_at--72--311Chr03:2321561..2321585 (25 bp)
ATAGCCTGAACCTTCTGCAGCAGCA
LOC_Os03g04900
OsAffx.3135.1.S1_at--112--6211Chr03:2321451..2321475 (25 bp)
GAGGCAGCTGACGATTCCATGGTGA
LOC_Os03g04900
OsAffx.3135.1.S1_at--1045--691Chr03:2321421..2321445 (25 bp)
ATGATGAACGATCTCCAGAGCAAGG
LOC_Os03g04900
OsAffx.3135.1.S1_at--404--9231Chr03:2321408..2321432 (25 bp)
TCCAGAGCAAGGAGCGTTGCTGCAC
LOC_Os03g04900
OsAffx.3135.1.S1_at--239--4511Chr03:2321346..2321370 (25 bp)
GCCGATGATGATGCGATCTGGGACA
LOC_Os03g04900
OsAffx.3135.1.S1_at--1104--5631Chr03:2321325..2321349 (25 bp)
GACAGCCTCTGGAGGCTCGTCGACG
LOC_Os03g04900
Target Sequence 
TGCGGTGGGTGAACTATCTCAGGCCGGACCTGAAGCGGGGGAAGATCACCCCCGACGAGGAGACCGTCATCCTCCAGCTG
CACGCCATGCTCGGCAACAGATGGTCGGCGATCGCGCGGTGCCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTG
GAGGACGCACTTCAAGAAGGCGAGGCCGTCGCGGCGTGCGCGGGCGCAGCTGCTGCACCAGTACCAGCTCCAGCAGCAGC
AGCAGCATCGCCAGTATCTCCATAGCCTGAACCTTCTGCAGCAGCAGCAGCAGCAGCTTCAGCAACAGCAACAGCAACAG
CAACAGCAGATGATGTTGCTGCAGGAGCAGGAGCAGCAGAGCCCGCAGGAGGAGGCAGCTGACGATTCCATGGTGATGAT
GATGATGAACGATCTCCAGAGCAAGGAGCGTTGCTGCACGGCGGTCTCGGTGGTGCCCGACGACTGCGTGCTCCCCGCCG
ATGATGATGCGATCTGGGACAGCCTCTGGAGGCTCGTCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis