Browse Element(s) Details


Os.55673.1.S1_at

Description gb:AK108534.1
DB_XREF= gi:32993743
TID=Os.55673.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C06, full insert sequence.
FL= gb:AK108534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0487010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04840OsAffx.24967.1.S1_at11/113+2281709..2285918expressed protein
LOC_Os03g04850OsAffx.24967.2.S1_at11/113+2292594..2293712hypothetical protein
LOC_Os03g04860OsAffx.22848.4.S1_at2/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04860OsAffx.22848.4.S1_x_at1/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04870Os.55673.1.S1_at10/113+2307979..2310711expressed protein
LOC_Os03g04890Os.53815.1.S1_at9/113+2315900..2320767zinc finger family protein, putative, expressed
LOC_Os03g04900OsAffx.3135.1.S1_at11/113+2321269..2322222Myb-like DNA-binding domain containing protein
LOC_Os03g04900Os.57514.1.S1_x_at1/113+2321269..2322222Myb-like DNA-binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55673.1.S1_at--762--7171Chr03:2310118..2310142 (25 bp)
GTCGGCAACAACTCGGTGAGGTACA
LOC_Os03g04870
Os.55673.1.S1_at--471--7031Chr03:2310138..2310162 (25 bp)
GTACACCTGCAAGACGTTGGTCCAA
LOC_Os03g04870
Os.55673.1.S1_at--1118--5571Chr03:2310222..2310246 (25 bp)
GAAAGGCAAGGCACTCGCGGACAAG
LOC_Os03g04870
Os.55673.1.S1_at--3--6311Chr03:2310412..2310436 (25 bp)
GATGACAAGTTCACCTGGTCGACTG
LOC_Os03g04870
Os.55673.1.S1_at--567--5091Chr03:2310470..2310494 (25 bp)
GCACGGCGGACAATTCTACGTTTCA
LOC_Os03g04870
Os.55673.1.S1_at--228--3731Chr03:2310485..2310509 (25 bp)
CTACGTTTCAGAATGGCACGGCCAT
LOC_Os03g04870
Os.55673.1.S1_at--692--2171Chr03:2310521..2310545 (25 bp)
ACACGGTTAGCACAGCCTGATCGAG
LOC_Os03g04870
Os.55673.1.S1_at--1007--511Chr03:2310540..2310564 (25 bp)
ATCGAGGATCGAGTTTGCTGGAGAA
LOC_Os03g04870
Os.55673.1.S1_at--737--10791Chr03:2310568..2310592 (25 bp)
TTGTTAGCTATATCACTTGGTGTGT
LOC_Os03g04870
Os.55673.1.S1_at--67--5051NONE
GCAGATGTCAGGTGTTGTGTCTTAT
NONE
Os.55673.1.S1_at--913--8292Chr07:9268208..9268291 (24 bp)
GGCTAAATATCCATTTCCGTGCTAT
NONE
Target Sequence 
GTCGGCAACAACTCGGTGAGGTACACCTGCAAGACGTTGGTCCAAGAAGCAGCCGCCGCCAGGGGCAGCGGCAGCGGTAG
CGGGGACGATAATATGATGATGAGGAAAGGCAAGGCACTCGCGGACAAGCTCAAGGCCCGCGGCCGTGTGGATTGGACGG
AGCTGGCGGAGTTCTGGTCGGAGCTGCTGATATCGCTCGCGCCGTCCGGGAGCGTCAGCGCCCACGAGAAGGGGCTCGGC
GACGGCGGCGAGTTCATCACGCACCTCTGGGCGCTGCTGTACCACGCGGGGATCGATGACAAGTTCACCTGGTCGACTGC
CACTGGCAGTACTGCCGGTGGCGACTCTGGCGGCACGGCGGACAATTCTACGTTTCAGAATGGCACGGCCATCGTCGAAC
CGCACACGGTTAGCACAGCCTGATCGAGGATCGAGTTTGCTGGAGAAGGATTGTTAGCTATATCACTTGGTGTGTGTGTG
TTTCAGTTAGATGGATTCGAGTATGCAGATGTCAGGTGTTGTGTCTTATGTAAGAGTGAGTGAAAAGGCTAAATATCCAT
TTCCGTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis