Browse Element(s) Details


OsAffx.24967.1.S1_at

Description tigr:9631.m00400
TID=OsAffx.24967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0484011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04790NANA3+2257872..2260775retrotransposon protein, putative, unclassified
LOC_Os03g04800NANA3+2261252..2264203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04810NANA3+2264417..2267227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04820OsAffx.21870.3.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04820OsAffx.21870.2.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04830Os.54272.1.S1_at11/113+2274461..2278949expressed protein
LOC_Os03g04840OsAffx.24967.1.S1_at11/113+2281709..2285918expressed protein
LOC_Os03g04850OsAffx.24967.2.S1_at11/113+2292594..2293712hypothetical protein
LOC_Os03g04860OsAffx.22848.4.S1_at2/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04860OsAffx.22848.4.S1_x_at1/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04870Os.55673.1.S1_at10/113+2307979..2310711expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24967.1.S1_at--58--6191Chr03:2285319..2285343 (25 bp)
GAGGAGCTCTTGACGTACTGCCAAC
LOC_Os03g04840
OsAffx.24967.1.S1_at--800--1891Chr03:2285374..2285398 (25 bp)
ACGTCGCGACGTGCAAACTTGAGCA
LOC_Os03g04840
OsAffx.24967.1.S1_at--832--2511Chr03:2285389..2285413 (25 bp)
AACTTGAGCAGCAATCGCCGCATGA
LOC_Os03g04840
OsAffx.24967.1.S1_at--495--4991Chr03:2285408..2285432 (25 bp)
GCATGAACCCGTCGAGAGCTATCAG
LOC_Os03g04840
OsAffx.24967.1.S1_at--978--9831Chr03:2285475..2285499 (25 bp)
TACAATCCGAAGCTGCTGCCGGTTG
LOC_Os03g04840
OsAffx.24967.1.S1_at--815--6611Chr03:2285496..2285520 (25 bp)
GTTGGCAACACCTCTGTTAGGCATA
LOC_Os03g04840
OsAffx.24967.1.S1_at--218--8371Chr03:2285626..2285650 (25 bp)
GGCGGGAGCTCAACAAGTCGTCTAA
LOC_Os03g04840
OsAffx.24967.1.S1_at--739--8651Chr03:2285778..2285802 (25 bp)
TGGGCTCTGCTGTACCATGCAGGGA
LOC_Os03g04840
OsAffx.24967.1.S1_at--743--5011Chr03:2285796..2285820 (25 bp)
GCAGGGATCGATGCCAAGTACTCTT
LOC_Os03g04840
OsAffx.24967.1.S1_at--472--3451Chr03:2285825..2285849 (25 bp)
CAGTGCCAGTACTGCCAGTGGTGAA
LOC_Os03g04840
OsAffx.24967.1.S1_at--473--1371Chr03:2285859..2285883 (25 bp)
AGAGCTGACGTTTACCCGTTTCAGA
LOC_Os03g04840
Target Sequence 
GAGGAGCTCTTGACGTACTGCCAACTAGCGGAGATCGAGACCATCGTCGTGTGGCACGTCGCGACGTGCAAACTTGAGCA
GCAATCGCCGCATGAACCCGTCGAGAGCTATCAGGTGGCCACCGCGCTGTCCAAGTACTGCGCCTACCTGGTGTTCTACA
ATCCGAAGCTGCTGCCGGTTGGCAACACCTCTGTTAGGCATACCTGCAAGACATTGGTTAGGCATGACAGCAGCTGTGAC
AGGAGTTGTGGTGGCGATGATTGCATGATAAGAAAAGGCGAGGCGCTCGCGGCGGCGCTGCTAAAAGGGCGGGAGCTCAA
CAAGTCGTCTAAAGAGCCGGGGATGTGGACGGAGCTGGCGGAGTTCTGGTCGGAGCTGCTGATATCGCTCGCGCCGTTTG
GGAGCGTTGGCGCCCACGAGAAGGGGCTCGGCGACGGCGGCGAGTTCATCACGCACCTGTGGGCTCTGCTGTACCATGCA
GGGATCGATGCCAAGTACTCTTGGTCCAGTGCCAGTACTGCCAGTGGTGAATCTGGCGGCAGAGCTGACGTTTACCCGTT
TCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis