Browse Element(s) Details


Os.54272.1.S1_at

Description gb:AK102965.1
DB_XREF= gi:32988174
TID=Os.54272.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115I21, full insert sequence.
FL= gb:AK102965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0483011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04760Os.57052.1.S1_at11/113+2247424..2250768expressed protein
LOC_Os03g04770Os.10339.1.S1_at11/113+2252077..2255272Beta-amylase, putative, expressed
LOC_Os03g04780OsAffx.3132.1.S1_at11/113+2255971..2256409RNA recognition motif family protein, expressed
LOC_Os03g04790NANA3+2257872..2260775retrotransposon protein, putative, unclassified
LOC_Os03g04800NANA3+2261252..2264203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04810NANA3+2264417..2267227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04820OsAffx.21870.3.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04820OsAffx.21870.2.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04830Os.54272.1.S1_at11/113+2274461..2278949expressed protein
LOC_Os03g04840OsAffx.24967.1.S1_at11/113+2281709..2285918expressed protein
LOC_Os03g04850OsAffx.24967.2.S1_at11/113+2292594..2293712hypothetical protein
LOC_Os03g04860OsAffx.22848.4.S1_at2/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04860OsAffx.22848.4.S1_x_at1/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54272.1.S1_at--852--1091Chr03:2278409..2278433 (25 bp)
AGTGGCAGGCACTAAGACAGTACTT
LOC_Os03g04830
Os.54272.1.S1_at--367--6771Chr03:2278454..2278478 (25 bp)
GTTAACTCGTCGTTTTGTAGCTGTT
LOC_Os03g04830
Os.54272.1.S1_at--702--2731Chr03:2278567..2278591 (25 bp)
AAGAATGCACTCTCGAGCAAGGCCC
LOC_Os03g04830
Os.54272.1.S1_at--460--1471Chr03:2278582..2278606 (25 bp)
AGCAAGGCCCTTATAAGCTACAGGT
LOC_Os03g04830
Os.54272.1.S1_at--617--2811Chr03:2278608..2278632 (25 bp)
AAGATTAGTTGGACGGCTGCCATGA
LOC_Os03g04830
Os.54272.1.S1_at--394--2311Chr03:2278648..2278672 (25 bp)
AAAGGTCCATGAAACTTGGTCGCAA
LOC_Os03g04830
Os.54272.1.S1_at--940--751Chr03:2278702..2278726 (25 bp)
ATGTAAGCTGTTCCATCTCAAGAAG
LOC_Os03g04830
Os.54272.1.S1_at--189--1471Chr03:2278722..2278746 (25 bp)
AGAAGTGCTGCCTTGGTATAACAAT
LOC_Os03g04830
Os.54272.1.S1_at--29--3271Chr03:2278757..2278781 (25 bp)
CAACTGATCTTGTACATGCTCTTGT
LOC_Os03g04830
Os.54272.1.S1_at--610--2571Chr03:2278810..2278834 (25 bp)
AACGATGTACTGGTAGTCTGCAAGA
LOC_Os03g04830
Os.54272.1.S1_at--777--7151Chr03:2278825..2278849 (25 bp)
GTCTGCAAGACTTAGGTACTACCCA
LOC_Os03g04830
Target Sequence 
AGTGGCAGGCACTAAGACAGTACTTGGGGTTGATGGATCTGTCGAGTTAACTCGTCGTTTTGTAGCTGTTGAACTGGAAG
ATATACTTGTGCTCAACATATGTGTTTTTGAGGGTGAAGACGAGGCTGAATTTGAGCTCTATCTAGGACAAAATGATGAA
GAATGCACTCTCGAGCAAGGCCCTTATAAGCTACAGGTGAAGATTAGTTGGACGGCTGCCATGAAGAAGCGATGGAGGGA
AAGGTCCATGAAACTTGGTCGCAAGTTCGTGTTGGTGCGATAACACGATGTCAATGTAAGCTGTTCCATCTCAAGAAGTG
CTGCCTTGGTATAACAATAAAAAATGTACAACTGATCTTGTACATGCTCTTGTACATGTACTATTTAGTTTGCCTTGGTA
TAACGATGTACTGGTAGTCTGCAAGACTTAGGTACTACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis