Browse Element(s) Details


OsAffx.3132.1.S1_at

Description tigr:9631.m00394
TID=OsAffx.3132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0478011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04720NANA3+2232800..2234530hypothetical protein
LOC_Os03g04740OsAffx.12733.1.S1_at11/113+2239908..2243106expressed protein
LOC_Os03g04750Os.46086.1.S1_s_at11/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04750Os.12819.1.S1_at1/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04760Os.57052.1.S1_at11/113+2247424..2250768expressed protein
LOC_Os03g04770Os.10339.1.S1_at11/113+2252077..2255272Beta-amylase, putative, expressed
LOC_Os03g04780OsAffx.3132.1.S1_at11/113+2255971..2256409RNA recognition motif family protein, expressed
LOC_Os03g04790NANA3+2257872..2260775retrotransposon protein, putative, unclassified
LOC_Os03g04800NANA3+2261252..2264203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04810NANA3+2264417..2267227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04820OsAffx.21870.3.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04820OsAffx.21870.2.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04830Os.54272.1.S1_at11/113+2274461..2278949expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3132.1.S1_at--607--10871Chr03:2256345..2256369 (25 bp)
TTGGCCCTTACACCGGCGATGAGGA
LOC_Os03g04780
OsAffx.3132.1.S1_at--609--4311Chr03:2256311..2256335 (25 bp)
CCATTTCCAGCTGTTCGGGTACGTG
LOC_Os03g04780
OsAffx.3132.1.S1_at--39--7691Chr03:2256295..2256319 (25 bp)
GGGTACGTGGCCAGCGTCCACATGC
LOC_Os03g04780
OsAffx.3132.1.S1_at--851--1931Chr03:2256243..2256267 (25 bp)
ACGGCTTCGCGTTTATCCAGTTCAC
LOC_Os03g04780
OsAffx.3132.1.S1_at--661--6811Chr03:2256233..2256257 (25 bp)
GTTTATCCAGTTCACTTGCCTCGAA
LOC_Os03g04780
OsAffx.3132.1.S1_at--986--10691Chr03:2256218..2256242 (25 bp)
TTGCCTCGAACACCTCATCAATGCA
LOC_Os03g04780
OsAffx.3132.1.S1_at--409--1731Chr03:2256072..2256202 (25 bp)
ACCATCCACGGCCATACGTTGGGCA
LOC_Os03g04780
OsAffx.3132.1.S1_at--1149--6611Chr03:2256055..2256079 (25 bp)
GTTGGGCACCCGATTAATAGAACCA
LOC_Os03g04780
OsAffx.3132.1.S1_at--827--9751Chr03:2256041..2256065 (25 bp)
TAATAGAACCAAGGCTCAGTCGCGG
LOC_Os03g04780
OsAffx.3132.1.S1_at--423--9651Chr03:2256026..2256050 (25 bp)
TCAGTCGCGGCGTAACAAGATACAC
LOC_Os03g04780
OsAffx.3132.1.S1_at--714--2751Chr03:2256010..2256034 (25 bp)
AAGATACACCACTGTCTTCGGCAAC
LOC_Os03g04780
Target Sequence 
TTGGCCCTTACACCGGCGATGAGGACCTCCGCCGCCATTTCCAGCTGTTCGGGTACGTGGCCAGCGTCCACATGCCCATC
GATCGCCACACCGGCCGGCACCACGGCTTCGCGTTTATCCAGTTCACTTGCCTCGAACACCTCATCAATGCACTCGCCTA
TCGCCACACCATCCACGGCCATACGTTGGGCACCCGATTAATAGAACCAAGGCTCAGTCGCGGCGTAACAAGATACACCA
CTGTCTTCGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis