Browse Element(s) Details


OsAffx.12733.1.S1_at

Description tigr:9631.m00390
TID=OsAffx.12733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0474011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04700Os.24942.4.A1_x_at7/113+2220338..2221135hypothetical protein
LOC_Os03g04700Os.24942.4.A1_at4/113+2220338..2221135hypothetical protein
LOC_Os03g04710Os.6284.1.S1_at11/113+2228018..2229741expressed protein
LOC_Os03g04720NANA3+2232800..2234530hypothetical protein
LOC_Os03g04740OsAffx.12733.1.S1_at11/113+2239908..2243106expressed protein
LOC_Os03g04750Os.46086.1.S1_s_at11/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04750Os.12819.1.S1_at1/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04760Os.57052.1.S1_at11/113+2247424..2250768expressed protein
LOC_Os03g04770Os.10339.1.S1_at11/113+2252077..2255272Beta-amylase, putative, expressed
LOC_Os03g04780OsAffx.3132.1.S1_at11/113+2255971..2256409RNA recognition motif family protein, expressed
LOC_Os03g04790NANA3+2257872..2260775retrotransposon protein, putative, unclassified
LOC_Os03g04800NANA3+2261252..2264203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04810NANA3+2264417..2267227retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12733.1.S1_at--474--1131Chr03:2242522..2242546 (25 bp)
AGTGCTGCTAGACCATTACGAGTTC
LOC_Os03g04740
OsAffx.12733.1.S1_at--1106--7651Chr03:2242617..2242641 (25 bp)
GGGTTACTCACCTCAGAATTCTTTC
LOC_Os03g04740
OsAffx.12733.1.S1_at--494--5211Chr03:2242632..2242656 (25 bp)
GAATTCTTTCAGTGCACCAGTTAGG
LOC_Os03g04740
OsAffx.12733.1.S1_at--1060--551Chr03:2242647..2242671 (25 bp)
ACCAGTTAGGGTTCAGTCGACATCA
LOC_Os03g04740
OsAffx.12733.1.S1_at--1036--3571Chr03:2242670..2242694 (25 bp)
CATATCATCAGGTTGCTCCAGGTAT
LOC_Os03g04740
OsAffx.12733.1.S1_at--231--1131Chr03:2242756..2242780 (25 bp)
AGTGCTGAACTGCAGCTTTCTCAGT
LOC_Os03g04740
OsAffx.12733.1.S1_at--1160--7411Chr03:2242779..2242803 (25 bp)
GTGTTCCTCGCTTCAAACTCAGGGA
LOC_Os03g04740
OsAffx.12733.1.S1_at--345--1711Chr03:2242811..2242835 (25 bp)
ACCAGCATGATCCATCGGCAGATAT
LOC_Os03g04740
OsAffx.12733.1.S1_at--1061--3111Chr03:2242900..2242924 (25 bp)
AATATTGATCCACCAGGGCGTCTTC
LOC_Os03g04740
OsAffx.12733.1.S1_at--287--2291Chr03:2242958..2242982 (25 bp)
AAATGAGGCCTGGTCATCAACCTAC
LOC_Os03g04740
OsAffx.12733.1.S1_at--49--2451Chr03:2243044..2243068 (25 bp)
AAAAGGACTTCCAATGGCCACCACT
LOC_Os03g04740
Target Sequence 
AGTGCTGCTAGACCATTACGAGTTCAGACAACACAATCTCAGCCACCATCCTCTGCAGTATCTCAGAATTCTGTCACTGC
TGCTAGACCATTACGGGGTTACTCACCTCAGAATTCTTTCAGTGCACCAGTTAGGGTTCAGTCGACATCATATCATCAGG
TTGCTCCAGGTATATCTCAAGGACTTCAGGTTCAGTCAACATCATACCTTCAGGTTGATCCAGGCAGGGCGGTTAGTGCT
GAACTGCAGCTTTCTCAGTGTTCCTCGCTTCAAACTCAGGGAATTCAACACCAGCATGATCCATCGGCAGATATTTACCA
AAACATATGGAAGGAGGCACTTGCTAAGCTGGCATCAGAGCTGGGGGTTTCTGATTACAATATTGATCCACCAGGGCGTC
TTCCAAGCACTCCTCAACCCAATCAGCTGCATGCTCAAATGAGGCCTGGTCATCAACCTACTCAAGCAACGGCAAGGCAG
GGAGTTCAAGCTAATGGTGGTCATGTTGCAGCAGCATCACAGAAAAGGACTTCCAATGGCCACCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis