Browse Element(s) Details


Os.6284.1.S1_at

Description gb:AK070000.1
DB_XREF= gi:32980024
TID=Os.6284.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039B07, full insert sequence.
FL= gb:AK070000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0471011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04680NANA3+2202489..2204105Cytochrome P450 family protein, expressed
LOC_Os03g04690Os.10491.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.2.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04700Os.24942.4.A1_x_at7/113+2220338..2221135hypothetical protein
LOC_Os03g04700Os.24942.4.A1_at4/113+2220338..2221135hypothetical protein
LOC_Os03g04710Os.6284.1.S1_at11/113+2228018..2229741expressed protein
LOC_Os03g04720NANA3+2232800..2234530hypothetical protein
LOC_Os03g04740OsAffx.12733.1.S1_at11/113+2239908..2243106expressed protein
LOC_Os03g04750Os.46086.1.S1_s_at11/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04750Os.12819.1.S1_at1/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04760Os.57052.1.S1_at11/113+2247424..2250768expressed protein
LOC_Os03g04770Os.10339.1.S1_at11/113+2252077..2255272Beta-amylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6284.1.S1_at--656--9951Chr03:2228935..2228955 (21 bp)
TACGCGCAGTTCCTGTATCAGATTA
LOC_Os03g04710
Os.6284.1.S1_at--862--3391Chr03:2229190..2229214 (25 bp)
CAGCTACTTCGAGCGGGCAGCGAGA
LOC_Os03g04710
Os.6284.1.S1_at--302--1831Chr03:2229388..2229412 (25 bp)
ACGCCGCGTTCTTGTGGGACACGGA
LOC_Os03g04710
Os.6284.1.S1_at--1006--3631Chr03:2229531..2229555 (25 bp)
CTTCCTGTTGTCTCTGAAACTAGCA
LOC_Os03g04710
Os.6284.1.S1_at--1110--6931Chr03:2229560..2229584 (25 bp)
GTAGTATTGGTAGTCTCGCGTTCAT
LOC_Os03g04710
Os.6284.1.S1_at--1100--6731Chr03:2229579..2229603 (25 bp)
GTTCATTTCAGTACTAGCTTCCCAA
LOC_Os03g04710
Os.6284.1.S1_at--487--8091Chr03:2229609..2229633 (25 bp)
GGAGCGCTAAATGGCTGGTCCAGTA
LOC_Os03g04710
Os.6284.1.S1_at--658--6891Chr03:2229639..2229663 (25 bp)
GTATACTGCTGTTGTAAATCACCAA
LOC_Os03g04710
Os.6284.1.S1_at--621--9931Chr03:2229677..2229701 (25 bp)
TACGACGTATGAATGCTGCAGCACT
LOC_Os03g04710
Os.6284.1.S1_at--158--1511Chr03:2229696..2229720 (25 bp)
AGCACTGATCTGAGCTTCGTGTCAC
LOC_Os03g04710
Os.6284.1.S1_at--257--4911Chr03:2229709..2229733 (25 bp)
GCTTCGTGTCACTATAACCTGTTTA
LOC_Os03g04710
Target Sequence 
TACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGGAGTACTACTCCCGTGCCATCCTCGCCGACCC
GAACGACGGCGAGCTCCTGTCGGAGTACGCCAAGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACT
TCGAGCGGGCAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACACGGACGAC
GGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCGCCGCTGCTGCTGCTCACTCGTCCTTGGC
TTCGGCAACAACCTGATCTGAACAAACGAACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTC
GCGTTCATTTCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCTGTTGTAAA
TCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGAGCTTCGTGTCACTATAACCTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis