Browse Element(s) Details


Os.47904.2.S1_at

Description gb:AK071009.1
DB_XREF= gi:32981032
TID=Os.47904.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080L10, full insert sequence.
FL= gb:AK071009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0469011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04650Os.49872.1.S1_at11/113+2178883..2180634Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_s_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660Os.48829.1.A1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04670OsAffx.3131.1.S1_at11/113+2197711..2199914hypothetical protein
LOC_Os03g04680NANA3+2202489..2204105Cytochrome P450 family protein, expressed
LOC_Os03g04690Os.10491.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.2.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04700Os.24942.4.A1_x_at7/113+2220338..2221135hypothetical protein
LOC_Os03g04700Os.24942.4.A1_at4/113+2220338..2221135hypothetical protein
LOC_Os03g04710Os.6284.1.S1_at11/113+2228018..2229741expressed protein
LOC_Os03g04720NANA3+2232800..2234530hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47904.2.S1_at--558--7751Chr03:2205699..2205723 (25 bp)
GGTGAGTTAGTGGAATCACATGCCA
LOC_Os03g04690
Os.47904.2.S1_at--1142--7511Chr03:2205690..2205714 (25 bp)
GTGGAATCACATGCCACTCGCAGCA
LOC_Os03g04690
Os.47904.2.S1_at--67--1511Chr03:2205669..2205693 (25 bp)
AGCACCATCTCTTCAATCGGCTATT
LOC_Os03g04690
Os.47904.2.S1_at--330--4331Chr03:2205665..2205689 (25 bp)
CCATCTCTTCAATCGGCTATTCAAT
LOC_Os03g04690
Os.47904.2.S1_at--687--3051Chr03:2205655..2205679 (25 bp)
AATCGGCTATTCAATTTGCAGCTAC
LOC_Os03g04690
Os.47904.2.S1_at--667--3111Chr03:2205643..2205667 (25 bp)
AATTTGCAGCTACCATTGCTTCCTG
LOC_Os03g04690
Os.47904.2.S1_at--1001--3391Chr03:2205637..2205661 (25 bp)
CAGCTACCATTGCTTCCTGTTCTGG
LOC_Os03g04690
Os.47904.2.S1_at--976--4911Chr03:2205626..2205650 (25 bp)
GCTTCCTGTTCTGGGTATCTGCCCT
LOC_Os03g04690
Os.47904.2.S1_at--1146--8791Chr03:2205620..2205644 (25 bp)
TGTTCTGGGTATCTGCCCTCTGTTC
LOC_Os03g04690
Os.47904.2.S1_at--921--4511Chr03:2205606..2205630 (25 bp)
GCCCTCTGTTCTTCTTACGAAAATC
LOC_Os03g04690
Os.47904.2.S1_at--903--1831Chr03:2205590..2205614 (25 bp)
ACGAAAATCTGTGTGCGTTTGGCCC
LOC_Os03g04690
Target Sequence 
GGTGAGTTAGTGGAATCACATGCCACTCGCAGCACCATCTCTTCAATCGGCTATTCAATTTGCAGCTACCATTGCTTCCT
GTTCTGGGTATCTGCCCTCTGTTCTTCTTACGAAAATCTGTGTGCGTTTGGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47904.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis