Browse Element(s) Details


Os.48829.1.A1_at

Description gb:AK061292.1
DB_XREF= gi:32971310
TID=Os.48829.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B03, full insert sequence.
FL= gb:AK061292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0466011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04650Os.49872.1.S1_at11/113+2178883..2180634Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_s_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660Os.48829.1.A1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04670OsAffx.3131.1.S1_at11/113+2197711..2199914hypothetical protein
LOC_Os03g04680NANA3+2202489..2204105Cytochrome P450 family protein, expressed
LOC_Os03g04690Os.10491.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.2.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.1.S1_at11/113+2204717..2207859expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48829.1.A1_at--1077--9611Chr03:2192512..2192536 (25 bp)
TCATGAGTCATTAGCCATCAGCCAT
LOC_Os03g04660
Os.48829.1.A1_at--1071--1671Chr03:2192531..2192555 (25 bp)
AGCCATGGCTGGTTCCGTTCGTGAC
LOC_Os03g04660
Os.48829.1.A1_at--338--5031Chr03:2192572..2192596 (25 bp)
GCAGCAACGTACGTCGTCAGCTAAA
LOC_Os03g04660
Os.48829.1.A1_at--1072--6391Chr03:2192613..2192637 (25 bp)
GATCGTCATCGTATACCACATCATT
LOC_Os03g04660
Os.48829.1.A1_at--1070--7831Chr03:2192641..2192665 (25 bp)
GGTACCAGGACTAGAGCTACACGTA
LOC_Os03g04660
Os.48829.1.A1_at--675--5631Chr03:2192669..2192693 (25 bp)
GACACGTATCAGTATTTCATCAGTT
LOC_Os03g04660
Os.48829.1.A1_at--270--7071Chr03:2192705..2192729 (25 bp)
GTAAGTGCCATCAAGTGTGTTTTCC
LOC_Os03g04660
Os.48829.1.A1_at--905--5151Chr03:2192777..2192801 (25 bp)
GCAACTGTGCCTCAGAGATGCTCGG
LOC_Os03g04660
Os.48829.1.A1_at--437--4991Chr03:2192820..2192844 (25 bp)
GCATGCTTGCATAGCTTATAGCCGT
LOC_Os03g04660
Os.48829.1.A1_at--25--7751Chr03:2192865..2192889 (25 bp)
GGTGTGTCCCTGTTAGTGATTATCT
LOC_Os03g04660
Os.48829.1.A1_at--765--6811Chr03:2192900..2192924 (25 bp)
GTTTTATGCGGCTTGTTGCTTTGCA
LOC_Os03g04660
Target Sequence 
TCATGAGTCATTAGCCATCAGCCATGGCTGGTTCCGTTCGTGACGTCCTCGTCAATGGCCGCAGCAACGTACGTCGTCAG
CTAAACTTACAATGACCTAATGATCGTCATCGTATACCACATCATTTATGGTACCAGGACTAGAGCTACACGTAGGTGAC
ACGTATCAGTATTTCATCAGTTCGTATACGTATGTAAGTGCCATCAAGTGTGTTTTCCTTTTAATGGTGTGTGTCCNTTT
TTTTTTTATTTAGAAAACGAACTGAGGCAACTGTGCCTCAGAGATGCTCGGGCCTCTCCTATGCACTATGCATGCTTGCA
TAGCTTATAGCCGTATATTGGCTATGTATAGGTTGGTGTGTCCCTGTTAGTGATTATCTGTTNGTTTCGGTTTTATGCGG
CTTGTTGCTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48829.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis