Browse Element(s) Details


OsAffx.3131.1.S1_at

Description tigr:9631.m00382
TID=OsAffx.3131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0467011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04650Os.49872.1.S1_at11/113+2178883..2180634Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_s_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660Os.48829.1.A1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04670OsAffx.3131.1.S1_at11/113+2197711..2199914hypothetical protein
LOC_Os03g04680NANA3+2202489..2204105Cytochrome P450 family protein, expressed
LOC_Os03g04690Os.10491.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.2.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04700Os.24942.4.A1_x_at7/113+2220338..2221135hypothetical protein
LOC_Os03g04700Os.24942.4.A1_at4/113+2220338..2221135hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3131.1.S1_at--393--6131Chr03:2198058..2198079 (22 bp)
GAGGGTAGCTCCAAAGACTTCATTA
LOC_Os03g04670
OsAffx.3131.1.S1_at--690--10751Chr03:2198019..2198043 (25 bp)
TTGACTCTCATCCACCTTGAAAATC
LOC_Os03g04670
OsAffx.3131.1.S1_at--178--2451Chr03:2198000..2198024 (25 bp)
AAAATCCCTTTCATTATCTCTTGGC
LOC_Os03g04670
OsAffx.3131.1.S1_at--895--151Chr03:2197988..2198012 (25 bp)
ATTATCTCTTGGCTTTTCTTACACC
LOC_Os03g04670
OsAffx.3131.1.S1_at--221--591Chr03:2197958..2197982 (25 bp)
ATCCACATGATGAAGACCCCGCTGC
LOC_Os03g04670
OsAffx.3131.1.S1_at--1095--7531Chr03:2197881..2197905 (25 bp)
GGGCCAGGCCGAGCCAAACTAACAG
LOC_Os03g04670
OsAffx.3131.1.S1_at--652--2451Chr03:2197861..2197885 (25 bp)
AACAGACGGGCCTCAACTTGGGCTA
LOC_Os03g04670
OsAffx.3131.1.S1_at--857--3951Chr03:2197812..2197836 (25 bp)
CGGTCACCTGGACCGATTCGGGAAT
LOC_Os03g04670
OsAffx.3131.1.S1_at--780--5251Chr03:2197791..2197815 (25 bp)
GAATCCGCGTCCTACCAGGTTGCTG
LOC_Os03g04670
OsAffx.3131.1.S1_at--799--10711Chr03:2197772..2197796 (25 bp)
TTGCTGCCTGCTTGTGTGTGATCGT
LOC_Os03g04670
OsAffx.3131.1.S1_at--309--8671Chr03:2197758..2197782 (25 bp)
TGTGTGATCGTCGTCTTTGCGCTGG
LOC_Os03g04670
Target Sequence 
GAGGGTAGCTCCAAAGACTTCATTATCACACTTCCACACTTGACTCTCATCCACCTTGAAAATCCCTTTCATTATCTCTT
GGCTTTTCTTACACCACCACATCCACATGATGAAGACCCCGCTGCCGCTGGGCTGATTGCCAACCTCAGCACGGGCAGAG
TCGCGTGGAACAACGTTGGGCCAGGCCGAGCCAAACTAACAGACGGGCCTCAACTTGGGCTACGCCGCTACACCCGCCCC
AGCTCTCGGTCACCTGGACCGATTCGGGAATCCGCGTCCTACCAGGTTGCTGCCTGCTTGTGTGTGATCGTCGTCTTTGC
GCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis