Browse Element(s) Details


OsAffx.12732.1.S1_at

Description tigr:9631.m00381
TID=OsAffx.12732.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF370589 putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0466011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04650Os.49872.1.S1_at11/113+2178883..2180634Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_s_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660Os.48829.1.A1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04670OsAffx.3131.1.S1_at11/113+2197711..2199914hypothetical protein
LOC_Os03g04680NANA3+2202489..2204105Cytochrome P450 family protein, expressed
LOC_Os03g04690Os.10491.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.2.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.1.S1_at11/113+2204717..2207859expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12732.1.S1_at--844--8391Chr03:2191906..2191930 (25 bp)
GGCGCTGTCGTGGTTCTTCTACATC
LOC_Os03g04660
OsAffx.12732.1.S1_at--97--4571Chr03:2191907..2191931 (25 bp)
GCGCTGTCGTGGTTCTTCTACATCC
LOC_Os03g04660
OsAffx.12732.1.S1_at--94--4691Chr03:2191909..2191933 (25 bp)
GCTGTCGTGGTTCTTCTACATCCTC
LOC_Os03g04660
OsAffx.12732.1.S1_at--59--8731Chr03:2191911..2191935 (25 bp)
TGTCGTGGTTCTTCTACATCCTCTC
LOC_Os03g04660
OsAffx.12732.1.S1_at--360--7491Chr03:2191915..2191939 (25 bp)
GTGGTTCTTCTACATCCTCTCCAAG
LOC_Os03g04660
OsAffx.12732.1.S1_at--237--1451Chr03:2191956..2191980 (25 bp)
AGAAGCTCCTGGAAGAGCTGGCGCC
LOC_Os03g04660
OsAffx.12732.1.S1_at--545--2691Chr03:2191958..2191982 (25 bp)
AAGCTCCTGGAAGAGCTGGCGCCCA
LOC_Os03g04660
OsAffx.12732.1.S1_at--568--1591Chr03:2191959..2191983 (25 bp)
AGCTCCTGGAAGAGCTGGCGCCCAT
LOC_Os03g04660
OsAffx.12732.1.S1_at--871--9271Chr03:2191962..2191986 (25 bp)
TCCTGGAAGAGCTGGCGCCCATCGC
LOC_Os03g04660
OsAffx.12732.1.S1_at--916--4311Chr03:2191980..2192004 (25 bp)
CCATCGCTGCCCAGAAGGGCGGCGA
LOC_Os03g04660
OsAffx.12732.1.S1_at--394--4251Chr03:2192418..2192442 (25 bp)
CCGTCGAGCCGAAGCTGTCCATCAT
LOC_Os03g04660
Target Sequence 
GGCGCTGTCGTGGTTCTTCTACATCCTCTCCAAGAACCCGCGCGTCGAGCAGAAGCTCCTGGAAGAGCTGGCGCCCATCG
CTGCCCAGAAGGGCGGCGACGGCGGCGGCATGGTGATATTCGACGCCAGCGAGCTCAAGAACCTGGTGTACCTGCAAGCG
GCGCTGTCCGAGTGCCTGAGGCTGTACCCGTCGGTGCCGTTCGAGCACAAGGCGGTGGCCGCCGACGACGTGCTCCCGAG
CGGGCACGAGATGAAGGCCGGAGACAAGGTACTCGTGTTCTCCTACTCCATGGGCAGGATGGAAGGCGTGTGGGGCAAGG
ACTGCACGGAGTTCCTGCCGGAGAGGTGGATCACCAGCGAAGGGAAGCTGCGGTACGAGCCGTCGTACAAGTTCTTCTCC
TTCAACGCCGGCCCGAGGACGTGCCTCGGCAAGGAGCTGGCGTTCGTGCAGCTCAAGACCGTGGCGGCGGCCGTGATGTG
GAACTTCGCCGTGGAGGTGGTGCCGGGGCACGCCGTCGAGCCGAAGCTGTCCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis