Browse Element(s) Details


Os.49872.1.S1_at

Description gb:AK067844.1
DB_XREF= gi:32977862
TID=Os.49872.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013125N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013125N12, full insert sequence.
FL= gb:AK119195.1 gb:AK067844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0465011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04640OsAffx.3130.1.S1_at11/113+2157804..2159327Cytochrome P450 family protein
LOC_Os03g04650Os.49872.1.S1_at11/113+2178883..2180634Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_s_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660Os.48829.1.A1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04670OsAffx.3131.1.S1_at11/113+2197711..2199914hypothetical protein
LOC_Os03g04680NANA3+2202489..2204105Cytochrome P450 family protein, expressed
LOC_Os03g04690Os.10491.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.2.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.1.S1_at11/113+2204717..2207859expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49872.1.S1_at--999--3191Chr03:2180051..2180075 (25 bp)
CAATGGAGCACAAGGGCCCGGCCGC
LOC_Os03g04650
Os.49872.1.S1_at--62--7531Chr03:2180368..2180392 (25 bp)
GTGGAGCCCAAGCTCTCCATCATAC
LOC_Os03g04650
Os.49872.1.S1_at--826--5291Chr03:2180429..2180453 (25 bp)
GAAGGCTTGCGGTTTGCTAGAGAAA
LOC_Os03g04650
Os.49872.1.S1_at--493--251Chr03:2180453..2180477 (25 bp)
ATATCGGATTCCATGGTTCTAGGAC
LOC_Os03g04650
Os.49872.1.S1_at--828--2491Chr03:2180511..2180535 (25 bp)
AACAGTGCTATTGTACGTCCATTTG
LOC_Os03g04650
Os.49872.1.S1_at--211--3991Chr03:2180526..2180550 (25 bp)
CGTCCATTTGGTGCGAATATCGTCT
LOC_Os03g04650
Os.49872.1.S1_at--780--251Chr03:2180542..2180566 (25 bp)
ATATCGTCTATAGCGATTTGCTCTG
LOC_Os03g04650
Os.49872.1.S1_at--657--9451Chr03:2180571..2180595 (25 bp)
TCTGGCCTCTGAGTCTGCGGTACTA
LOC_Os03g04650
Os.49872.1.S1_at--186--1151Chr03:2180582..2180606 (25 bp)
AGTCTGCGGTACTACTAGCTGAAAT
LOC_Os03g04650
Os.49872.1.S1_at--357--2031Chr03:2180595..2180619 (25 bp)
ACTAGCTGAAATGCCGCGCGAATGC
LOC_Os03g04650
Os.49872.1.S1_at--1040--4551Chr03:2180610..2180634 (25 bp)
GCGCGAATGCGCGTATTTTTCTTGC
LOC_Os03g04650
Target Sequence 
CAATGGAGCACAAGGGCCCGGCCGCCGCCGATGTGCTGCCGAGCGGGCACGAGGTGCGCCCGGGGGACAAGATCGTGGTG
TCGCTGTACGCGATGGGGAGGATGGAGTCCGTGTGGGGCAGCGACTGCATGGAGTTCAGGCCGGAGCGGTGGATCTCCGA
CGACGGCAAGCTGCGGTACGTGCCATCNTACAAGTTCATGTCCTTCAACTCGGGGCCCCGGACCTGCCTCGGCAAGGACA
TGGCGTTCGTGCAGCTCAAGACCGCGGNGGCGGCGGTAATGAAGAACTTCGAGATCGAGGCCGTTGCCGGCCACGTCGTG
GAGCCCAAGCTCTCCATCATACTCCACATGAAGAATGGCTTCATGGTGAGGGTTAAGCGAAGGCTTGCGGTTTGCTAGAG
AAATATCGGATTCCATGGTTCTAGGACAAGGACAAGAGGGAGGGGAATCAATCACGATTAAACAGTGCTATTGTACGTCC
ATTTGGTGCGAATATCGTCTATAGCGATTTGCTCTGCNCCTCTGGCCTCTGAGTCTGCGGTACTACTAGCTGAAATGCCG
CGCGAATGCGCGTATTTTTCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis