Browse Element(s) Details


Os.46086.1.S1_s_at

Description gb:AU068867
DB_XREF= gi:5003718
DB_XREF=AU068867
CLONE=C50765_8Z
TID=Os.46086.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.46086 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_563847.1 (A.thaliana) putative 60S ribosomal protein L21 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0475011/1160S ribosomal protein L21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04700Os.24942.4.A1_x_at7/113+2220338..2221135hypothetical protein
LOC_Os03g04700Os.24942.4.A1_at4/113+2220338..2221135hypothetical protein
LOC_Os03g04710Os.6284.1.S1_at11/113+2228018..2229741expressed protein
LOC_Os03g04720NANA3+2232800..2234530hypothetical protein
LOC_Os03g04740OsAffx.12733.1.S1_at11/113+2239908..2243106expressed protein
LOC_Os03g04750Os.46086.1.S1_s_at11/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04750Os.12819.1.S1_at1/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04760Os.57052.1.S1_at11/113+2247424..2250768expressed protein
LOC_Os03g04770Os.10339.1.S1_at11/113+2252077..2255272Beta-amylase, putative, expressed
LOC_Os03g04780OsAffx.3132.1.S1_at11/113+2255971..2256409RNA recognition motif family protein, expressed
LOC_Os03g04790NANA3+2257872..2260775retrotransposon protein, putative, unclassified
LOC_Os03g04800NANA3+2261252..2264203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04810NANA3+2264417..2267227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04820OsAffx.21870.3.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04820OsAffx.21870.2.S1_x_at5/113+2270543..2271334hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46086.1.S1_s_at--303--7811Chr03:2245412..2245436 (25 bp)
GGTCGGTAACCGCATCATCAGGAAG
LOC_Os03g04750
Os.46086.1.S1_s_at--1142--3071Chr03:2245502..2245526 (25 bp)
AATCAAGAACGATCAGCTCAAGGCT
LOC_Os03g04750
Os.46086.1.S1_s_at--1099--8391Chr03:2245535..2245559 (25 bp)
GGCCCGTGGTGAGGTTATCAGCACC
LOC_Os03g04750
Os.46086.1.S1_s_at--45--10171Chr03:2245550..2245574 (25 bp)
TATCAGCACCAAGAGACAGCCCGAG
LOC_Os03g04750
Os.46086.1.S1_s_at--403--6131Chr03:2245572..2245596 (25 bp)
GAGGGACCCAAACCTGGTTTCATGG
LOC_Os03g04750
Os.46086.1.S1_s_at--1102--7711Chr03:2245658..2245682 (25 bp)
GGGTGGTTACTAGAATGCTTGTTTC
LOC_Os03g04750
Os.46086.1.S1_s_at--341--8071Chr03:2245690..2245714 (25 bp)
GGAGAATCCAATTAGCGTCTATGCT
LOC_Os03g04750
Os.46086.1.S1_s_at--1048--1631Chr03:2245703..2245727 (25 bp)
AGCGTCTATGCTTATCGGAATGTTT
LOC_Os03g04750
Os.46086.1.S1_s_at--212--5271Chr03:2245720..2245744 (25 bp)
GAATGTTTTGGTACTGATTAGCCCT
LOC_Os03g04750
Os.46086.1.S1_s_at--515--10451Chr03:2245737..2245761 (25 bp)
TTAGCCCTTTTTGTTGTCTGGAATC
LOC_Os03g04750
Os.46086.1.S1_s_at--368--7191Chr03:2245752..2245776 (25 bp)
GTCTGGAATCTGAACCTCTATGTGG
LOC_Os03g04750
Target Sequence 
GGTCGGTAACCGCATCATCAGGAAGAGGATCCATGTCCGTGTGGAGCATGTCCAGCCATCCAGGTGCACCGAGGAGTCCG
CCTGAGGAAAATCAAGAACGATCAGCTCAAGGCTGATGCCAAGGCCCGTGGTGAGGTTATCAGCACCAAGAGACAGCCCG
AGGGACCCAAACCTGGTTTCATGGTTGAGGGTGTACGCTGGAGACTGTTACCCCCATTCCGTATGATGTGGTCAATGATC
TCAAGGGTGGTTACTAGAATGCTTGTTTCTTGAACTGGAGAATCCAATTAGCGTCTATGCTTATCGGAATGTTTTGGTAC
TGATTAGCCCTTTTTGTTGTCTGGAATCTGAACCTCTATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46086.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis