Browse Element(s) Details


Os.53815.1.S1_at

Description gb:AK100238.1
DB_XREF= gi:32985447
TID=Os.53815.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052J15, full insert sequence.
FL= gb:AK100238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g048909/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04850OsAffx.24967.2.S1_at11/113+2292594..2293712hypothetical protein
LOC_Os03g04860OsAffx.22848.4.S1_at2/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04860OsAffx.22848.4.S1_x_at1/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04870Os.55673.1.S1_at10/113+2307979..2310711expressed protein
LOC_Os03g04890Os.53815.1.S1_at9/113+2315900..2320767zinc finger family protein, putative, expressed
LOC_Os03g04900OsAffx.3135.1.S1_at11/113+2321269..2322222Myb-like DNA-binding domain containing protein
LOC_Os03g04900Os.57514.1.S1_x_at1/113+2321269..2322222Myb-like DNA-binding domain containing protein
LOC_Os03g04910Os.40360.1.S1_x_at1/113+2336410..2337645hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53815.1.S1_at--1008--1351Chr03:2320236..2320260 (25 bp)
AGAGCAACTGCACGTGGCGACTCGA
LOC_Os03g04890
Os.53815.1.S1_at--374--5651Chr03:2320259..2320283 (25 bp)
GACAGAGCTCACAACCCTTATTAAT
LOC_Os03g04890
Os.53815.1.S1_at--1067--10451Chr03:2320279..2320303 (25 bp)
TTAATACTTACCAGACACCATCCAT
LOC_Os03g04890
Os.53815.1.S1_at--893--7911Chr03:2320304..2320328 (25 bp)
GGTTGATATGCTACAGCGCTCGCAG
LOC_Os03g04890
Os.53815.1.S1_at--180--9171Chr03:2320336..2320360 (25 bp)
TGCCCTCTGTTGTCGAAATGCTGAA
LOC_Os03g04890
Os.53815.1.S1_at--513--8971Chr03:2320357..2320381 (25 bp)
TGAACCGTTCTTCAACTGTTGCTAC
LOC_Os03g04890
Os.53815.1.S1_at--956--6651Chr03:2320374..2320398 (25 bp)
GTTGCTACTTCAAAGTCCTTCTCTA
LOC_Os03g04890
Os.53815.1.S1_at--75--8791Chr03:2320497..2320521 (25 bp)
TGTTTTCTGCAGATCTTTTTCCATT
LOC_Os03g04890
Os.53815.1.S1_at--695--10811NONE
TTGTACATAAAATTCTCCCTAGGGT
NONE
Os.53815.1.S1_at--1139--9291NONE
TCCCTAGGGTTGTTCCAGGATGCTT
NONE
Os.53815.1.S1_at--1056--4751Chr03:2320743..2320767 (25 bp)
GCTGCATTCACACTTTCGATTGGTT
LOC_Os03g04890
Target Sequence 
AGAGCAACTGCACGTGGCGACTCGACAGAGCTCACAACCCTTATTAATACTTACCAGACACCATCCATGGTTGATATGCT
ACAGCGCTCGCAGACTATCCTGCCCTCTGTTGTCGAAATGCTGAACCGTTCTTCAACTGTTGCTACTTCAAAGTCCTTCT
CTAGCTACCTCCCAACCTCCCGCCATATTGCTTGATCATAATGTAGTTCTAGCAATAACCAGCCAAGTGTTAGGGAAATG
AAGATATCCAATTCTTTAGTTTGTTTTCTGCAGATCTTTTTCCATTATTTATAGTGGGCATGGGATTAGATTCATTATAA
ATGTTTGGGTATATACTCTAGTTTGGTGTACATGGGTAAACTTTGAAAGGGAATGATAAACAGCATAGCTGAAACAGGTG
AAAGGAATGCTGACATTTCATTTGTTTCTCATCATCATTTTATATTAATTCTCATTTTGTACATAAAATTCTCCCTAGGG
TTGTTCCAGGATGCTTGTAAGCTCTTGGCTGCATTCACACTTTCGATTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis