Browse Element(s) Details


Os.14998.1.S1_at

Description gb:AK100347.1
DB_XREF= gi:32985556
TID=Os.14998.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082L12, full insert sequence.
FL= gb:AK100347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3767011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14998.1.S1_at--510--951Chr04:22178611..22178635 (25 bp)
AGGACAGATCCAGGCCATCAGTAGA
LOC_Os04g37670
Os.14998.1.S1_at--842--931Chr04:22177855..22177879 (25 bp)
AGGCACGTCATGAAACTGCTCGTCA
LOC_Os04g37670
Os.14998.1.S1_at--207--9391Chr04:22177836..22177860 (25 bp)
TCGTCACGTACTCCGTCGAGAAGGA
LOC_Os04g37670
Os.14998.1.S1_at--850--5311Chr04:22177813..22177837 (25 bp)
GAAGGGTCGTTCAGATCATCCGCGT
LOC_Os04g37670
Os.14998.1.S1_at--802--4631Chr04:22177792..22177816 (25 bp)
GCGTCGAATCGATCAGTACCTATCT
LOC_Os04g37670
Os.14998.1.S1_at--413--6471Chr04:22177706..22177730 (25 bp)
GATAGGTCCCTTCTTCAAATGGTCT
LOC_Os04g37670
Os.14998.1.S1_at--905--3291Chr04:22177691..22177715 (25 bp)
CAAATGGTCTTCTTTCTTCAGTAAA
LOC_Os04g37670
Os.14998.1.S1_at--668--9551Chr04:22177677..22177701 (25 bp)
TCTTCAGTAAATATCGCACGCCGTT
LOC_Os04g37670
Os.14998.1.S1_at--760--6791Chr04:22177655..22177679 (25 bp)
GTTTTGTCAGTGCTTGTGTTTCCCC
LOC_Os04g37670
Os.14998.1.S1_at--739--6011Chr04:22177590..22177614 (25 bp)
GAGAGAGATGCCTCACTCCAGAACT
LOC_Os04g37670
Os.14998.1.S1_at--318--9511Chr04:22177565..22177589 (25 bp)
TCTCGCTGTGAGATTCATTTGCCAA
LOC_Os04g37670
Target Sequence 
AGGACAGATCCAGGCCATCAGTAGAAGGTTGGTTGGAATTGTAAGGAGCATGTCAAAGTTTCCTACGTACAGGAGGAGAC
ACAGGCACGTCATGAAACTGCTCGTCACGTACTCCGTCGAGAAGGAAGGGTCGTTCAGATCATCCGCGTCGAATCGATCA
GTACCTATCTTTGAGATAACGCAATTGGAAGTGTAATTGAAAGTTGAAACCATATTCAGAAATCAGAGTCAGATAGGTCC
CTTCTTCAAATGGTCTTCTTTCTTCAGTAAATATCGCACGCCGTTTTGTCAGTGCTTGTGTTTCCCCAAATCTAGGAGGT
TTTGTATAGCTTTATTTTTTTTACAAGGAGAGAGATGCCTCACTCCAGAACTTCTCGCTGTGAGATTCATTTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis