Browse Element(s) Details

Os.1503.1.S1_at

Description

gb:AB053474.1
DB_XREF= gi:13365773
GEN=RISBZ5
TID=Os.1503.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1503 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for RISBZ5, complete cds.
PROD=RISBZ5
FL= gb:AK065941.1 gb:AB053474.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45140	11/11	bZIP transcription factor family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45090	Os.46304.1.S1_a_at	11/11	6	+	27270985..27274167	expressed protein
LOC_Os06g45100	Os.53365.1.S1_at	11/11	6	+	27274529..27277847	cryptochrome dash, putative, expressed
LOC_Os06g45110	Os.17942.1.S1_at	11/11	6	+	27278953..27283979	expressed protein
LOC_Os06g45120	Os.11821.1.S2_at	11/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120	Os.11821.1.S1_at	10/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130	Os.50560.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45130	OsAffx.28111.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45140	Os.1503.1.S1_at	11/11	6	+	27298917..27301107	bZIP transcription factor family protein, expressed
LOC_Os06g45150	OsAffx.15933.1.S1_s_at	11/11	6	+	27302502..27303231	Pollen allergen family protein, expressed
LOC_Os06g45160	Os.22589.1.S1_at	11/11	6	+	27305729..27306412	Pollen allergen family protein, expressed
LOC_Os06g45170	NA	NA	6	+	27308513..27313034	retrotransposon protein, putative, unclassified
LOC_Os06g45180	NA	NA	6	+	27315963..27316607	Pollen allergen family protein, expressed
LOC_Os06g45190	NA	NA	6	+	27322841..27323414	Pollen allergen family protein, expressed
LOC_Os06g45200	OsAffx.28113.1.S1_at	11/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	OsAffx.28113.1.S1_x_at	10/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.50182.1.S1_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.24196.1.A1_x_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.25409.1.S1_x_at	1/11	6	+	27325494..27327706	Pollen allergen family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.1503.1.S1_at--296--329	1	Chr06:27299732..27299756 (25 bp)	CAAAGGCTTGAACCTGGGTCGACAG	LOC_Os06g45140
Os.1503.1.S1_at--313--565	1	Chr06:27299712..27299736 (25 bp)	GACAGGTTCAGAACTCACCGGTTCA	LOC_Os06g45140
Os.1503.1.S1_at--238--789	1	Chr06:27299693..27299717 (25 bp)	GGTTCAAAGCGCTGCAAGCCTAGAG	LOC_Os06g45140
Os.1503.1.S1_at--1141--1001	1	Chr06:27299673..27299697 (25 bp)	TAGAGAGCCTGGACAACCGGATATC	LOC_Os06g45140
Os.1503.1.S1_at--468--11	1	Chr06:27299506..27299530 (25 bp)	ATTCTCTGGCTACTAATGCTCAAAA	LOC_Os06g45140
Os.1503.1.S1_at--212--697	1	Chr06:27299428..27299452 (25 bp)	GTAGCTGACAGAAACCTTCCCAAAC	LOC_Os06g45140
Os.1503.1.S1_at--684--191	1	Chr06:27299371..27299395 (25 bp)	ACGGTATCCTCTGTTACTAGGTGCA	LOC_Os06g45140
Os.1503.1.S1_at--832--701	1	Chr06:27299322..27299346 (25 bp)	GTACTAGGTACTACAGTCTGAGGCA	LOC_Os06g45140
Os.1503.1.S1_at--767--681	1	Chr06:27299264..27299288 (25 bp)	GTTTTAGTGCGTTTGATCTGCGGCA	LOC_Os06g45140
Os.1503.1.S1_at--310--949	1	Chr06:27299248..27299272 (25 bp)	TCTGCGGCAATCAAGGCCATCTGAT	LOC_Os06g45140
Os.1503.1.S1_at--620--653	1	Chr06:27299166..27299190 (25 bp)	GATTTTGATCACCTCTAGTCGTCAG	LOC_Os06g45140

Target Sequence

CAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGA
TATCCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGNCCTTNAAGACACTTCATCCGTGTTCNAGAGAGCTTGAGATTC
TAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTNTTCAGTTTCCTATTTTTAGTTTATGTTTGNATTCTCTGGCTAC
TAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAAC
CTTCCCAAACAAATCTCCATCAGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGA
CAAGCTGCTAAGTACTAGGTACTACAGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGTGCG
TTTGATCTGCGGCAATCAAGGCCATCTGATCGAAATTTGATTGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATA
ATAGTTTGATTTTGATCACCTCTAGTCGTCAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis