Browse Element(s) Details


Os.15152.1.S1_a_at

Description gb:AK064168.1
DB_XREF= gi:32974186
TID=Os.15152.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A01, full insert sequence.
FL= gb:AK064168.1 gb:AK062298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4535011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45300Os.52229.1.S1_at11/115+26202553..26205166enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os05g45310Os.18326.1.S1_at11/115+26205668..26208715ER lumen protein retaining receptor, putative, expressed
LOC_Os05g45320Os.50603.1.S1_at11/115+26209089..26211365expressed protein
LOC_Os05g45320Os.36280.1.S1_at10/115+26209089..26211365expressed protein
LOC_Os05g45330NANA5+26212287..26213257expressed protein
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45360NANA5+26234495..26235451hypothetical protein
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006457biological_processprotein folding
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15152.1.S1_a_at--156--6831Chr05:26229152..26229176 (25 bp)
GTTTCAGTTGATGTATTCCGATTGG
LOC_Os05g45350
Os.15152.1.S1_a_at--876--3711Chr05:26228915..26228939 (25 bp)
CTAGCGTGCGTTGGGAAAAGAGACA
LOC_Os05g45350
Os.15152.1.S1_a_at--158--8151Chr05:26228728..26228752 (25 bp)
GGAAAAAATTAGGACACGGATGACA
LOC_Os05g45350
Os.15152.1.S1_a_at--833--651Chr05:26228718..26228742 (25 bp)
AGGACACGGATGACAAACAAAAAGT
LOC_Os05g45350
Os.15152.1.S1_a_at--62--10171Chr05:26228686..26228710 (25 bp)
TATAAGTAGTTCTTGGACTGATATC
LOC_Os05g45350
Os.15152.1.S1_a_at--1021--3831Chr05:26228434..26228458 (25 bp)
CTGCTAGGAGATGGCGAGAATACTC
LOC_Os05g45350
Os.15152.1.S1_a_at--32--4051Chr05:26228420..26228444 (25 bp)
CGAGAATACTCGAGAAAAGGCGCAG
LOC_Os05g45350
Os.15152.1.S1_a_at--284--2311Chr05:26228405..26228429 (25 bp)
AAAGGCGCAGACAGGCCACCGGAGT
LOC_Os05g45350
Os.15152.1.S1_a_at--254--5051Chr05:26228399..26228423 (25 bp)
GCAGACAGGCCACCGGAGTACAAAC
LOC_Os05g45350
Os.15152.1.S1_a_at--1133--8431Chr05:26228392..26228416 (25 bp)
GGCCACCGGAGTACAAACTTCCAGA
LOC_Os05g45350
Os.15152.1.S1_a_at--965--2511Chr05:26228377..26228401 (25 bp)
AACTTCCAGAGGCAGCGGGCAATAA
LOC_Os05g45350
Target Sequence 
GTTTCAGTTGATGTATTCCGATTGGTAAATTTGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATT
AGGACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCNNNNNNNNNCNNANNNNNNNNNA
NNNNNNNNNNNNNNNNANNNNANNNGAAGAAGAAGGAACNGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGC
GAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15152.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis