Browse Element(s) Details


Os.15283.1.S1_at

Description gb:AY224471.1
DB_XREF= gi:29367468
TID=Os.15283.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15283 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 26647 thioredoxin-like protein mRNA, complete cds.
PROD=thioredoxin-like protein
FL= gb:AY224471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5731011/11Uncharacterized conserved protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15283.1.S1_at--260--1591Chr04:33901834..33901858 (25 bp)
AGCTCGAAAGATTACTCTCCACAAG
LOC_Os04g57310
Os.15283.1.S1_at--459--5431Chr04:33901866..33902271 (25 bp)
GAACCTTGATTATGAAACTGCCATG
LOC_Os04g57310
Os.15283.1.S1_at--1071--8011Chr04:33902273..33902297 (25 bp)
GGAGGATACATGCTATACTTTCAGA
LOC_Os04g57310
Os.15283.1.S1_at--268--1111Chr04:33903101..33903125 (25 bp)
AGTGGGACTTGGTTGGATTTATGCA
LOC_Os04g57310
Os.15283.1.S1_at--134--6751Chr04:33903126..33903146 (21 bp)
GTTACTAAGTATGAGCCTGTAGCTA
LOC_Os04g57310
Os.15283.1.S1_at--824--7471Chr04:33903359..33903383 (25 bp)
GTGTGTGGGCCAAATACCGGATGCA
LOC_Os04g57310
Os.15283.1.S1_at--187--4251Chr04:33903375..33903556 (25 bp)
CCGGATGCAAATTACAGGTCGACCT
LOC_Os04g57310
Os.15283.1.S1_at--269--2131Chr04:33903545..33903569 (25 bp)
ACAGGTCGACCTCCACTAGAGGAAA
LOC_Os04g57310
Os.15283.1.S1_at--542--771Chr04:33903705..33903729 (25 bp)
ATGTGAGCAACGGAGCATCGGTCTG
LOC_Os04g57310
Os.15283.1.S1_at--925--4971Chr04:33903719..33903743 (25 bp)
GCATCGGTCTGCTGTGGCTACCATT
LOC_Os04g57310
Os.15283.1.S1_at--624--7071Chr04:33903868..33903892 (25 bp)
GTAATAGTATCATCTGTACACTGAA
LOC_Os04g57310
Target Sequence 
AGCTCGAAAGATTACTCTCCACAAGACAATCAGAACCTTGATTATGAAACTGCCATGGGGAGGATACATGCTATACTTTC
AGATGGAACAATAGTCACAGATGTTGAGGCATTTAGAAAGCTGTATGAGGAAGTGGGACTTGGTTGGATTTATGCAGTTA
CTAAGTATGAGCCTGTAGCTAAAGTAGCAAATGCAATATATGGTGTGTGGGCCAAATACCGGATGCAAATTACAGGTCGA
CCTCCACTAGAGGAAATTATGGAATCCAGAAAACTAGCAGCCGAATGCAAAGATGATAAAGTGTGCAAGATGTGAGCAAC
GGAGCATCGGTCTGCTGTGGCTACCATTCCCACATACGCTTAGGTNGACACACAATCNCACATACAAAGCTAATCTCNCC
ATACAGATCATTATAATGCATAGTGCTATAGATAAGATTATGAGAACGACGATACNGTAATTTGCCTGAGATGTAATAGT
ATCATCTGTACACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis