Browse Element(s) Details


Os.15304.1.A1_at

Description gb:AK107245.1
DB_XREF= gi:32992454
TID=Os.15304.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F09, full insert sequence.
FL= gb:AK107245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1078011/11ids4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10770Os.50235.1.S1_a_at11/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770Os.50235.2.S1_at10/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770OsAffx.14035.1.S1_at1/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10760NANA2+5688749..5689589AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os02g10780Os.15304.1.A1_at11/112+5706636..5709119ids4, putative, expressed
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15304.1.A1_at--216--5951Chr02:5708538..5708562 (25 bp)
GAGAAGGGTTCAAAGCCCAGCTCCT
LOC_Os02g10780
Os.15304.1.A1_at--581--4291Chr02:5708712..5708736 (25 bp)
CCTCTGCACGGCAGCAATGGGCAGG
LOC_Os02g10780
Os.15304.1.A1_at--608--6711Chr02:5708795..5708819 (25 bp)
GTTCGGTATCGTTGTTTCGCCTGCA
LOC_Os02g10780
Os.15304.1.A1_at--468--7851Chr02:5708853..5708877 (25 bp)
GGTAGGAGTTTGTAACTGGCTATCA
LOC_Os02g10780
Os.15304.1.A1_at--826--3891Chr02:5708868..5708892 (25 bp)
CTGGCTATCAGTTCATGTTTCGTTT
LOC_Os02g10780
Os.15304.1.A1_at--469--9611Chr02:5708880..5708904 (25 bp)
TCATGTTTCGTTTTAACTTGGGTAT
LOC_Os02g10780
Os.15304.1.A1_at--14--2071Chr02:5708895..5708919 (25 bp)
ACTTGGGTATTTTTCGTGTAATCTG
LOC_Os02g10780
Os.15304.1.A1_at--781--10251Chr02:5708920..5708944 (25 bp)
TTTGTTTCCCACCTGCTGTAAAAAT
LOC_Os02g10780
Os.15304.1.A1_at--973--1271Chr02:5708986..5709010 (25 bp)
AGATCTCAATGTGCAGCCTGACTAC
LOC_Os02g10780
Os.15304.1.A1_at--787--5691Chr02:5709005..5709029 (25 bp)
GACTACTTTGTCACTTGATGGGATG
LOC_Os02g10780
Os.15304.1.A1_at--112--8791Chr02:5709059..5709083 (25 bp)
TGTTAGATGGTTTGTATGGCTGTAT
LOC_Os02g10780
Target Sequence 
GAGAAGGGTTCAAAGCCCAGCTCCTCCTCCTCGGCCAACGGTGGAGCCGTCCCGGGAGAGGCCGAGGCCGAGGATGAGAG
GAGCACGGACATGAAGAGCACCGTCACGGCGGCGCTCAGGGCGCTGAGAGAGATCCGGAGCGGGAGCTCGACGGTGAGCG
TCTTCTCCCTGCCGCCTCTGCACGGCAGCAATGGGCAGGATGAACCGGGGAGGTGAAAACGAGAATGGGAAAGAAAAGGA
AATGATCTTGNCGCTGCGTTCGGTATCGTTGTTTCGCCTGCACTTCTGCTCAAATGCTCAGTGATCTTGGCANCTTGGTA
GGAGTTTGTAACTGGCTATCAGTTCATGTTTCGTTTTAACTTGGGTATTTTTCGTGTAATCTGTTTGTTTCCCACCTGCT
GTAAAAATGAGAGGGAAAAATAGATTAGTATAAAGTTCAGGGTAAACATAGATCTCAATGTGCAGCCTGACTACTTTGTC
ACTTGATGGGATGATTTTTTTTTGTTTATGTGCTTCTGTGTTTGTTAGATGGTTTGTATGGCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15304.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis