Browse Element(s) Details


Os.15350.1.S1_x_at

Description gb:AK069056.1
DB_XREF= gi:32979080
TID=Os.15350.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004G21, full insert sequence.
FL= gb:AK069056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0840011/11LIM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08380OsAffx.27509.1.S1_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_s_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_at9/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08390Os.52681.1.S1_at11/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08390Os.56071.1.S1_at8/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08400Os.15350.1.S1_x_at11/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08400Os.21811.1.S1_at1/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08410Os.47463.1.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08410Os.14491.2.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08420NANA6+4112423..4115755transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15350.1.S1_x_at--789--6331Chr06:4098349..4098373 (25 bp)
GATGCATGCGTGGTTGCGACTTAAA
LOC_Os06g08400
Os.15350.1.S1_x_at--1096--6491Chr06:4099310..4099334 (25 bp)
GATATCGCACACTTAGTCCAGACGT
LOC_Os06g08400
Os.15350.1.S1_x_at--671--6131Chr06:4099339..4099363 (25 bp)
GAGGGCATATGCCAAGTTCTTGCTC
LOC_Os06g08400
Os.15350.1.S1_x_at--395--7071Chr06:4099403..4099427 (25 bp)
GTAATGGTGCTTCAACGTCTTCATC
LOC_Os06g08400
Os.15350.1.S1_x_at--385--1271Chr06:4099515..4099539 (25 bp)
AGATACCTCAATGGCCTATGGCGAT
LOC_Os06g08400
Os.15350.1.S1_x_at--277--8511Chr06:4099551..4099575 (25 bp)
TGGCAACCGAGCTGTTCTTCAGTAT
LOC_Os06g08400
Os.15350.1.S1_x_at--637--1191Chr06:4099571..4099595 (25 bp)
AGTATGGTCTAAAGCGCACCCTTGA
LOC_Os06g08400
Os.15350.1.S1_x_at--384--5091Chr06:4099586..4099610 (25 bp)
GCACCCTTGAGCATATCCGGTTAAC
LOC_Os06g08400
Os.15350.1.S1_x_at--857--6391Chr06:4099667..4099691 (25 bp)
GATCGATTTGTCATTAAGCGTCCAT
LOC_Os06g08400
Os.15350.1.S1_x_at--237--5311Chr06:4099756..4099780 (25 bp)
GAAGGGCTAACTGACGACATTGATT
LOC_Os06g08400
Os.15350.1.S1_x_at--938--10451Chr06:4099795..4099819 (25 bp)
TTAGCCCAACCAATCACACATGTAT
LOC_Os06g08400
Target Sequence 
GATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTC
ACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCATCAGCATCCACA
TCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGTCAGATACCTC
AATGGCCTATGGCGATGGTTTTAGAGCTGGCAACCGAGCTGTTCTTCAGTATGGTCTAAAGCGCACCCTTGAGCATATCC
GGTTAACAGGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCATTAA
GCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCT
AACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15350.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis