Browse Element(s) Details


OsAffx.27509.1.S1_at

Description gb:AK100271.1
DB_XREF= gi:32985480
TID=OsAffx.27509.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069L11, full insert sequence.
FL= gb:AK100271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0838011/11Beta-1,3-glucan synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08350OsAffx.15309.1.S1_at11/116+4050269..4051805expressed protein
LOC_Os06g08360NANA6+4061445..4062329UPF0326 protein hag1, putative, expressed
LOC_Os06g08370OsAffx.23250.2.S1_x_at3/116+4063784..4064226hypothetical protein
LOC_Os06g08380OsAffx.27509.1.S1_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_s_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_at9/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08390Os.52681.1.S1_at11/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08390Os.56071.1.S1_at8/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08400Os.15350.1.S1_x_at11/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08400Os.21811.1.S1_at1/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08410Os.47463.1.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08410Os.14491.2.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27509.1.S1_at--703--8151Chr06:4069407..4069431 (25 bp)
GGAAATGTCACCCACCATGAATACA
LOC_Os06g08380
OsAffx.27509.1.S1_at--923--8591Chr06:4069357..4069381 (25 bp)
TGGTCTTAATCAAATTTCTCTCTTT
LOC_Os06g08380
OsAffx.27509.1.S1_at--640--1351Chr06:4069290..4069314 (25 bp)
AGAGACATCTATCGCTTGGGTCACC
LOC_Os06g08380
OsAffx.27509.1.S1_at--408--8631Chr06:4069274..4069298 (25 bp)
TGGGTCACCGCTTTGACTTTTTCCG
LOC_Os06g08380
OsAffx.27509.1.S1_at--100--2051Chr06:4069259..4069283 (25 bp)
ACTTTTTCCGGATGCTGTCGTGCTA
LOC_Os06g08380
OsAffx.27509.1.S1_at--1019--7191Chr06:4069243..4069267 (25 bp)
GTCGTGCTACTTTACCACTGTTGGA
LOC_Os06g08380
OsAffx.27509.1.S1_at--264--9811Chr06:4068980..4069004 (25 bp)
TAACACTGCTCTTCAGGCGGCTATG
LOC_Os06g08380
OsAffx.27509.1.S1_at--322--6231Chr06:4068923..4068947 (25 bp)
GATGGCCTTACCCATGTTTATGGAG
LOC_Os06g08380
OsAffx.27509.1.S1_at--1066--10511Chr06:4068823..4068847 (25 bp)
TTCACTTTCTCCCTTGGCACAAAAT
LOC_Os06g08380
OsAffx.27509.1.S1_at--371--4611Chr06:4068751..4068775 (25 bp)
GCGACCGGCAGAGGCTTTGTAGTTC
LOC_Os06g08380
OsAffx.27509.1.S1_at--335--11Chr06:4068733..4068757 (25 bp)
GTAGTTCGCCATGTAAAATTCCCTG
LOC_Os06g08380
Target Sequence 
GGAAATGTCACCCACCATGAATACATTCAAGTTGGCAAAGGACGAGATGTTGGTCTTAATCAAATTTCTCTCTTTGAAGC
TAAAGTGGCATGTGGTAATGGAGAGCAAACACTCAGCAGAGACATCTATCGCTTGGGTCACCGCTTTGACTTTTTCCGGA
TGCTGTCGTGCTACTTTACCACTGTTGGATTTTATATCAGTTCAATGATGGTTGTCATAATTGTCTATGTCTTCTTGTAT
GGAAGACTTTACCTAGCATTAAGTGGACTCGAGTTAGCAATTATGAAGCAAGCACGAATGAGAGGTAACACTGCTCTTCA
GGCGGCTATGGGGTCTCAATCTATTGTGCAGCTAGGTCTTTTGATGGCCTTACCCATGTTTATGGAGATTGGACTAGAAA
GGGGTTTTAGAAGTGCCCTAGGGGATTTCATCATTATGCAGCTTCAGCTCTGCTCTGTTTTCTTCACTTTCTCCCTTGGC
ACAAAATCACATTACTTTGGCCGCACAATTCTGCATGGTGGTGCCAAATATAAAGCGACCGGCAGAGGCTTTGTAGTTCG
CCATGTAAAATTCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis