Browse Element(s) Details


OsAffx.27509.1.S2_at

Description tigr:9634.m00776
TID=OsAffx.27509.1
CNT=2
FEA=FLmRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=1,3-beta-D-glucan synthase, putative
FL= gb:AK100271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g083809/11Beta-1,3-glucan synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08350OsAffx.15309.1.S1_at11/116+4050269..4051805expressed protein
LOC_Os06g08360NANA6+4061445..4062329UPF0326 protein hag1, putative, expressed
LOC_Os06g08370OsAffx.23250.2.S1_x_at3/116+4063784..4064226hypothetical protein
LOC_Os06g08380OsAffx.27509.1.S1_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_s_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_at9/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08390Os.52681.1.S1_at11/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08390Os.56071.1.S1_at8/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08400Os.15350.1.S1_x_at11/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08400Os.21811.1.S1_at1/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08410Os.47463.1.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08410Os.14491.2.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27509.1.S2_at--75--8011NONE
GGATGGGCCATTCTTCAGATATCTC
NONE
OsAffx.27509.1.S2_at--967--8651NONE
TGGGCCATTCTTCAGATATCTCAAG
NONE
OsAffx.27509.1.S2_at--429--6511Chr06:4066324..4066348 (25 bp)
GATATCTCAAGCCAGCAAGCCGGTG
LOC_Os06g08380
OsAffx.27509.1.S2_at--463--9531Chr06:4066320..4066344 (25 bp)
TCTCAAGCCAGCAAGCCGGTGGTGA
LOC_Os06g08380
OsAffx.27509.1.S2_at--90--3411Chr06:4066312..4066336 (25 bp)
CAGCAAGCCGGTGGTGAAGGCCTTC
LOC_Os06g08380
OsAffx.27509.1.S2_at--523--4311Chr06:4066293..4066317 (25 bp)
GCCTTCGGGCTATGGGGATCCGTCA
LOC_Os06g08380
OsAffx.27509.1.S2_at--32--6491Chr06:4066253..4066277 (25 bp)
GATACGAGTACCTGATGGGGATCCT
LOC_Os06g08380
OsAffx.27509.1.S2_at--113--3811Chr06:4066129..4066153 (25 bp)
CTCCCGCATCTTGGCAGGCGGGAAG
LOC_Os06g08380
OsAffx.27509.1.S2_at--1043--5371Chr06:4066108..4066132 (25 bp)
GAAGAAGCAGAGCTGAGCCCGCACA
LOC_Os06g08380
OsAffx.27509.1.S2_at--624--1451Chr06:4066106..4066130 (25 bp)
AGAAGCAGAGCTGAGCCCGCACAAA
LOC_Os06g08380
OsAffx.27509.1.S2_at--1052--2711Chr06:4066104..4066128 (25 bp)
AAGCAGAGCTGAGCCCGCACAAAGT
LOC_Os06g08380
Target Sequence 
GGATGGGCCATTCTTCAGATATCTCAAGCCAGCAAGCCGGTGGTGAAGGCCTTCGGGCTATGGGGATCCGTCAAGGCCCT
CTCGAGGGGATACGAGTACCTGATGGGGATCCTCATCTTCGTCCCCGTCGCCGTGCTGGCGTGGTTCCCCTTCGTCTCCG
AGTTCCAGACGAGGCTGCTCTTCAACCAGGCCTTCAGCCGAGGCCTCCAGATCTCCCGCATCTTGGCAGGCGGGAAGAAG
CAGAGCTGAGCCCGCACAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27509.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis