Browse Element(s) Details


Os.15435.1.S1_at

Description gb:AK060332.1
DB_XREF= gi:32970350
TID=Os.15435.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B07, full insert sequence.
FL= gb:AK060332.1 gb:AK099149.1 gb:AK099125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3736011/11GTP-binding protein SAR1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37320OsAffx.32067.1.S1_x_at11/1112+22886566..22889168Lipoxygenase 2.1, chloroplast precursor, putative
LOC_Os12g37330NANA12+22891363..22894318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37340NANA12+22894634..22900732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37350NANA12+22901276..22903277Lipoxygenase 2.2, chloroplast precursor, putative
LOC_Os12g37360Os.15435.1.S1_at11/1112+22906210..22910151GTP-binding protein SAR1A, putative, expressed
LOC_Os12g37370Os.36925.1.A1_at11/1112+22913089..22914534DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed
LOC_Os12g37380Os.32935.1.S1_at11/1112+22915206..22917555RNA pseudouridylate synthase, putative, expressed
LOC_Os12g37390Os.4910.1.S1_at11/1112+22918164..22920305expressed protein
LOC_Os12g37400Os.24951.1.S1_at11/1112+22920535..22925863PROLIFERA protein, putative, expressed
LOC_Os12g37410Os.8070.1.S1_at11/1112+22933838..22935119Ocs-element binding factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048221biological_processrough ER to cis-Golgi vesicle-mediated transport
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005783cellular_componentendoplasmic reticulum
GO:0005829cellular_componentcytosol
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15435.1.S1_at--826--7731Chr12:22906780..22906804 (25 bp)
GGTGGTCTACCTCGTGGATGCCTAC
LOC_Os12g37360
Os.15435.1.S1_at--172--1331Chr12:22906748..22906772 (25 bp)
AGAGGTTCTCCGAGTCGAAGAAGGA
LOC_Os12g37360
Os.15435.1.S1_at--260--4211Chr12:22906551..22906575 (25 bp)
CCCCTGGAGGTGTTCATGTGCAGCA
LOC_Os12g37360
Os.15435.1.S1_at--41--6651Chr12:22906440..22906464 (25 bp)
GTTGAGGTAGTCTTCATAGTTCATA
LOC_Os12g37360
Os.15435.1.S1_at--540--291Chr12:22906425..22906449 (25 bp)
ATAGTTCATACTCCTGTTTCACCTT
LOC_Os12g37360
Os.15435.1.S1_at--353--6831Chr12:22906410..22906434 (25 bp)
GTTTCACCTTACCACAGAGATGATT
LOC_Os12g37360
Os.15435.1.S1_at--1129--4851Chr12:22906363..22906387 (25 bp)
GCTAGCAATCTGGTCATGGTGGTTC
LOC_Os12g37360
Os.15435.1.S1_at--209--811Chr12:22906348..22906372 (25 bp)
ATGGTGGTTCATGGTTCTTCCGGTA
LOC_Os12g37360
Os.15435.1.S1_at--660--7891Chr12:22906336..22906360 (25 bp)
GGTTCTTCCGGTACATATGTGGTGG
LOC_Os12g37360
Os.15435.1.S1_at--635--5731Chr12:22906300..22906324 (25 bp)
GACTGGGATTTGTGCTAGATTTTTC
LOC_Os12g37360
Os.15435.1.S1_at--717--8831Chr12:22906218..22906242 (25 bp)
TGATTTGATATATCCTCGTCAGAGG
LOC_Os12g37360
Target Sequence 
GGTGGTCTACCTCGTGGATGCCTACGACAAGGAGAGGTTCTCCGAGTCGAAGAAGGAGCTCGACGCCCTCCTCTCGGACG
ACTCCCTGGCCACCGTCCCCTTCCTGATCCTGGGCAACAAGATCGACATCCCCTACGCCGCGTCGGAGGAGGAGCTCCGC
TACCACATGGGGCTGAGCAACTTCACCACCGGCAAGGGCANGGTGAGCCTCGGCGAGTCCAACGTTCGCCCCCTGGAGGT
GTTCATGTGCAGCATCGTCCGCAAGATGGGCTATGGGGATGGGTTCAAGTGGGTGTCACAGTACATCAAGTAGGGTGTTG
TTNGTTTTTGCTGGAAAAATGTTGAGGTAGTCTTCATAGTTCATACTCCTGTTTCACCTTACCACAGAGATGATTTTAGG
AGGGAGCTAGAGCTATAGCTAGCAATCTGGTCATGGTGGTTCATGGTTCTTCCGGTACATATGTGGTGGAAGCAGCGAAA
GACTGGGATTTGTGCTAGATTTTTCTTCAGTTAATTAAAAAGTGTGACTTTTAAAGATATAGAAACATCTTTTTAAAAGC
ATTGATTTGATATATCCTCGTCAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis